Search result

BaseInfo

ncRNA ID novel_zma_miR2648
Species Zea mays
Class miRNA
Genome position Chr5:222468560-222468654 [+]
Reference genome RefGen_v4
Source SRR2089713;SRR2089714;SRR2287160;SRR2287162;SRR2287165;SRR2089701
Length 24
Mature sequence(if miRNA) 72 - AAUAGAAUAAGAUAGAAGGACUAA - 95
Stem-loop(if miRNA) --     C  C         C        C        U       A
  AGUCC UC AUUUUAUUC AUUUUAGU UCUAAAUU CCAAAUA G
  ||||| || ||||||||| |||||||| |||||||| ||||||| G
  UCAGG AG UAGAAUAAG UAAAAUCA AGAUUUAA GGUUUAU A
AA     A  A         A        U        C       A
Stem-loop sequence AGUCCCUCCAUUUUAUUCCAUUUUAGUCUCUAAAUUUCCAAAUAAGGAAUAUUUGGCAAUUUAGAUACUAAAAUAGAAUAAGAUAGAAGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538756.1
ncRNA:24   AAUC---AGGAAGAUAGAAUAAGAUAA   1
  **||---|=||||||||||*|||||||
targets:494   CCAGCCAUUCUUCUAUCUUCUUCUAUU   520

2.5 PREDICTED: Zea mays uncharacterized LOC109940018 (LOC109940018), mRNA NA coding protein psRNATarget
AY108890.1
ncRNA:24   AAUC---AGGAAGAUAGAAUAAGAUAA   1
  **||---|=||||||||||*|||||||
targets:459   GCAGCCAUUCUUCUAUCUUCUUCUAUU   485

2.5 Zea mays PCO139133 mRNA sequence NA coding protein psRNATarget