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BaseInfo

ncRNA ID	novel_zma_miR2647
Species	Zea mays
Class	miRNA
Genome position	Chr5:209623066-209623153 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	22
Mature sequence(if miRNA)	1 - CAAUCCACUCCAAUCCACAUGG - 22
Stem-loop(if miRNA)	--AUA         UG     A  AAUAA     AAG     UG C      UGGAUUGGA  GGAUU GA     UUGGG   AAUUU  A U      |||||||||  ||||| ||     |||||   |||||  | U      ACCUAACCU  CCUAA CU     AACCU   UUAGG  U G GGUAC         CA     -  ----C     AAA     GU C
Stem-loop sequence	AUAUGGAUUGGAUGGGAUUAGAAAUAAUUGGGAAGAAUUUUGACUUGCUUGGGAUUAAAUCCAACUCAAUCCACUCCAAUCCACAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682725.2	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||||||||||||||| targets:290   CCAUGUGGAUUGGAGUGGAUUG   311 Target Full Sequence	0.0	PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB167578.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||||||||||*|||| targets:12   CCAUGUGGAUUGGAGUGUAUUG   33 Target Full Sequence	1.5	Sequence 5242 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239247.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||||||||||*|||| targets:12   CCAUGUGGAUUGGAGUGUAUUG   33 Target Full Sequence	1.5	Sequence 5242 from Patent EP2985353	NA	coding protein	psRNATarget
HI407117.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||||||||||*|||| targets:12   CCAUGUGGAUUGGAGUGUAUUG   33 Target Full Sequence	1.5	Sequence 5242 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   =||||||||||||||||*|||| targets:92   UCAUGUGGAUUGGAGUGUAUUG   113 Target Full Sequence	1.5	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
JB167414.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   =||||||||||||||||*|||| targets:92   UCAUGUGGAUUGGAGUGUAUUG   113 Target Full Sequence	1.5	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   =||||||||||||||||*|||| targets:92   UCAUGUGGAUUGGAGUGUAUUG   113 Target Full Sequence	1.5	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
BT054344.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |=|||||||||||||||*|||| targets:1065   CUAUGUGGAUUGGAGUGUAUUG   1086 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152495.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |=|||||||||||||||*|||| targets:1065   CUAUGUGGAUUGGAGUGUAUUG   1086 Target Full Sequence	1.5	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
AY104840.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |=|||||||||||||||*|||| targets:1259   CUAUGUGGAUUGGAGUGUAUUG   1280 Target Full Sequence	1.5	Zea mays PCO100726 mRNA sequence	NA	coding protein	psRNATarget
NM_001174772.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||*|||||||||||* targets:1124   CCAUGUGGACUGGAGUGGAUUC   1145 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382006 (LOC100382006), mRNA	NA	coding protein	psRNATarget
BT062864.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||||||*|||||||||||* targets:1124   CCAUGUGGACUGGAGUGGAUUC   1145 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002K01 mRNA, complete cds	NA	coding protein	psRNATarget
BT066512.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   *||||||||||||||*|||||| targets:1919   GCAUGUGGAUUGGAGGGGAUUG   1940 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0013P08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350033.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   *||||||||||||||*|||||| targets:2828   GCAUGUGGAUUGGAGGGGAUUG   2849 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001350032.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   *||||||||||||||*|||||| targets:2853   GCAUGUGGAUUGGAGGGGAUUG   2874 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 1, mRNA	NA	coding protein	psRNATarget
XM_020551501.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||||||||* targets:1234   CCAUAUGGAUUGGAGUGGAUUA   1255 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ090705.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   *=|||||||||||||*|||||| targets:129   GUAUGUGGAUUGGAGGGGAUUG   150 Target Full Sequence	1.5	TSA: Zea mays contig26352, mRNA sequence	NA	coding protein	psRNATarget
JB170278.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUG   34 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
HI409817.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUG   34 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUG   34 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:36   CCAUAUGGAUUGGAGGGGAUUG   57 Target Full Sequence	2.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUG   35 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
JB169285.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUG   35 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
HI408824.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUG   35 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
EU944315.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:108   CCAUAUGGAUUGGAGGGGAUUG   129 Target Full Sequence	2.5	Zea mays clone 210152 mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:782   CCAUAUGGAUUGGAGGGGAUUG   803 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:398   CCAUAUGGAUUGGAGGGGAUUG   419 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT041645.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1252   CCAUAUGGAUUGGAGGGGAUUG   1273 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1137   CCAUAUGGAUUGGAGGGGAUUG   1158 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT085188.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1293   CCAUAUGGAUUGGAGGGGAUUG   1314 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1169   CCAUAUGGAUUGGAGGGGAUUG   1190 Target Full Sequence	2.5	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1006   CCAUAUGGAUUGGAGGGGAUUG   1027 Target Full Sequence	2.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU959771.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1248   CCAUAUGGAUUGGAGGGGAUUG   1269 Target Full Sequence	2.5	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
BT042625.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:772   CCAUAUGGAUUGGAGGGGAUUG   793 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0379P04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUG   1562 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUG   1562 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350187.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1561   CCAUAUGGAUUGGAGGGGAUUG   1582 Target Full Sequence	2.5	Zea mays mTERF family protein (LOC100283286), mRNA	NA	coding protein	psRNATarget
XM_020548795.1	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   ||||*||||||||||*|||||| targets:1312   CCAUAUGGAUUGGAGGGGAUUG   1333 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275326 (LOC100275326), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671184.2	ncRNA:22   GGUACACCUAACCUCACCUAAC   1   |||||*|||||||||*|||||| targets:1085   CCAUGGGGAUUGGAGAGGAUUG   1106 Target Full Sequence	2.5	PREDICTED: Zea mays thioredoxin M3, chloroplastic (LOC103646448), mRNA	NA	coding protein	psRNATarget