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BaseInfo

ncRNA ID	novel_zma_miR2646
Species	Zea mays
Class	miRNA
Genome position	Chr5:217117256-217117388 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	110 - GUGGGUUGUCUGGGCGGCGGUGGC - 133
Stem-loop(if miRNA)	--U           AC   G  -  UG GU   G       U GU GUGG       AGCUUUG       U    GCUGCCGCUCG  CAG UC CA  G  CCA CCAGAGG G  G    UCGACGC       CGGCUGU G    |||||||||||  ||| || ||  |  ||| ||||||| |  |    |||||||       |||||||    UGGCGGCGGGU  GUU GG GU  U  GGU GGUCUCC C  U    AGCUGCG       GCCGACG U CGG           CU   G  U  GU UG   A       - UG ----       -----CA       G
Stem-loop sequence	UGCUGCCGCUCGACCAGGUCCAUGGGUCCAGCCAGAGGUGGUGGUGGUCGACGCAGCUUUGCGGCUGUUGUGGCAGCCGACGCGUCGAUGUCCCUCUGGAUGGGUUUGUGUGGGUUGUCUGGGCGGCGGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT056208.2	ncRNA:24   CGGUGGCGGCGGGUCUGUUGGGUG   1   |||||||||||||||||||||||| targets:748   GCCACCGCCGCCCAGACAACCCAC   771 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0079I13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153348.1	ncRNA:24   CGGUGGCGGCGGGUCUGUUGGGUG   1   |||||||||||||||||||||||| targets:748   GCCACCGCCGCCCAGACAACCCAC   771 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280425 (LOC100280425), mRNA	NA	coding protein	psRNATarget
JX428495.1	ncRNA:24   CGGUGGCGGCGGGUCUGUUGGGUG   1   |*|=|||||||||||||*|||||* targets:34   GGCGCCGCCGCCCAGACCACCCAG   57 Target Full Sequence	2.5	Zea mays subsp. mays clone pUT3093 E2F6 E2F-DP type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT065957.1	ncRNA:24   CGGUGGCGGCGGGUCUGUUGGGUG   1   |*|=|||||||||||||*|||||* targets:131   GGCGCCGCCGCCCAGACCACCCAG   154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175699.1	ncRNA:24   CGGUGGCGGCGGGUCUGUUGGGUG   1   |*|=|||||||||||||*|||||* targets:131   GGCGCCGCCGCCCAGACCACCCAG   154 Target Full Sequence	2.5	Zea mays Transcription factor-like protein DPB (LOC100383020), mRNA	NA	coding protein	psRNATarget