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BaseInfo

ncRNA ID novel_zma_miR2645
Species Zea mays
Class miRNA
Genome position Chr5:19599642-19599724 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 21
Mature sequence(if miRNA) 1 - CUUUUUGGUACAUAGAUUUUG - 21
Stem-loop(if miRNA) ----C            A                 AGA     
     UUUUUGGUACAU GAUUUUGCUAUGUAUCU   GAUAUG
     |||||||||||| |||||||||||||||||   |||||U
     AAAAACCAUGUA UUAAAACGAUACGUAGA   CUAUAU
UUGAA            G                 --G     
Stem-loop sequence CUUUUUGGUACAUAGAUUUUGCUAUGUAUCUAGAGAUAUGUUAUAUCGAGAUGCAUAGCAAAAUUGAUGUACCAAAAAAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066692.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *=|=||||||||||||=||||
targets:2096   GGAGAUCUAUGUACCAGAAAG   2116

2.5 Zea mays full-length cDNA clone ZM_BFb0052C19 mRNA, complete cds NA coding protein psRNATarget
NM_001158333.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *=|=||||||||||||=||||
targets:2071   GGAGAUCUAUGUACCAGAAAG   2091

2.5 Zea mays uncharacterized LOC100285440 (cl574_1), mRNA NA coding protein psRNATarget
EU972242.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *=|=||||||||||||=||||
targets:2067   GGAGAUCUAUGUACCAGAAAG   2087

2.5 Zea mays clone 378320 thiamine biosynthesis protein thiC mRNA, complete cds NA coding protein psRNATarget
AY109877.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *=|=||||||||||||=||||
targets:1574   GGAGAUCUAUGUACCAGAAAG   1594

2.5 Zea mays CL574_1 mRNA sequence NA coding protein psRNATarget
EZ063952.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *=|=||||||||||||=||||
targets:233   GGAGAUCUAUGUACCAGAAAG   253

2.5 TSA: Zea mays contig65075, mRNA sequence NA coding protein psRNATarget
XM_008646100.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:448   GAAAAUAUAUGUACCAAGAAG   468

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646102.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:427   GAAAAUAUAUGUACCAAGAAG   447

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008646101.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:448   GAAAAUAUAUGUACCAAGAAG   468

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008646098.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:448   GAAAAUAUAUGUACCAAGAAG   468

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646103.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:427   GAAAAUAUAUGUACCAAGAAG   447

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020537814.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:385   GAAAAUAUAUGUACCAAGAAG   405

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008646104.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *|||||*||||||||||=|||
targets:427   GAAAAUAUAUGUACCAAGAAG   447

2.5 PREDICTED: Zea mays TRF-like 10 (LOC103625712), transcript variant X7, mRNA NA coding protein psRNATarget
BT043140.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  =|||||=*||||||||||||*
targets:1581   UAAAAUUGAUGUACCAAAAAA   1601

3.0 Zea mays full-length cDNA clone ZM_BFc0108F17 mRNA, complete cds NA coding protein psRNATarget
NM_001165451.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  =|||||=*||||||||||||*
targets:1581   UAAAAUUGAUGUACCAAAAAA   1601

3.0 Zea mays uncharacterized LOC100275548 (LOC100275548), mRNA NA coding protein psRNATarget
XM_008650739.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:1673   AAAAAUCAAUGUAACAAAAAG   1693

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650740.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:1658   AAAAAUCAAUGUAACAAAAAG   1678

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539335.1
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:1629   AAAAAUCAAUGUAACAAAAAG   1649

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008650744.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:763   AAAAAUCAAUGUAACAAAAAG   783

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008650743.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:755   AAAAAUCAAUGUAACAAAAAG   775

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008650742.2
ncRNA:21   GUUUUAGAUACAUGGUUUUUC   1
  *||||||*|||||*|||||||
targets:1647   AAAAAUCAAUGUAACAAAAAG   1667

2.5 PREDICTED: Zea mays uncharacterized LOC100278145 (LOC100278145), transcript variant X3, mRNA NA coding protein psRNATarget
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