Search result

BaseInfo

ncRNA ID novel_zma_miR2644
Species Zea mays
Class miRNA
Genome position Chr5:210562804-210562927 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - GGCAUCUAGGAUGAAUUUCAAACU - 24
Stem-loop(if miRNA) --               U     UG   UUAAA        --   -    CU   -A    A  G
  UUUGAAAUUCAUCUU GAUGU  AGA     AAAAUAGA  AGU GUCA  AUC  ACAC UG U
  ||||||||||||||| |||||  |||     ||||||||  ||| ||||  |||  |||| || G
  AAACUUUAAGUAGGA CUACG  UCU     UUUUAUCU  UCG CAGU  UGG  UGUG AC A
UC               U     GU   --UUA        GU   U    --   AC    -  A
Stem-loop sequence UUUGAAAUUCAUCUUUGAUGUUGAGAUUAAAAAAAUAGAAGUGUCACUAUCAACACAUGGUGAACAGUGUCAGGUUGACUGCUUGUCUAUUUUAUUUCUUGGCAUCUAGGAUGAAUUUCAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY110425.1
ncRNA:24   UCAAACUUUAAGUAGGAUCUACGG   1
  ||||||||||||||||||||||=|
targets:822   AGUUUGAAAUUCAUCCUAGAUGUC   845

1.5 Zea mays CL28396_2 mRNA sequence NA coding protein psRNATarget