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BaseInfo

ncRNA ID	novel_zma_miR2639
Species	Zea mays
Class	miRNA
Genome position	Chr5:166704670-166704737 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - GGAGGAUUAGAGGGGAUUGAGGGG - 24
Stem-loop(if miRNA)	--        A                     UA   GGAGGAUU GAGGGGAUUGAGGGGGGAAAU  G   |||||||| |||||||||||||||||||||   CUUCCUAA CUUCCUUAACUCCCCCCUUUA  U GU        C                     CU
Stem-loop sequence	GGAGGAUUAGAGGGGAUUGAGGGGGGAAAUUAGUUCAUUUCCCCCCUCAAUUCCUUCCAAUCCUUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008649581.2	ncRNA:24   GGGGAGUUAGGGGAGAUUAGG-AGG   1   |||||||||||||||||||||-||| targets:1800   CCCCUCAAUCCCCUCUAAUCCCUCC   1824 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   |||||||||||||||*|||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   |||||||||||||||*|||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   |||||||||||||||*|||||||| targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   =|=||||||||||||*|||||||| targets:1465   UCUCUCAAUCCCCUCCAAUCCUCC   1488 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   |*|||||||||||||*|||||||| targets:77   CACCUCAAUCCCCUCCAAUCCUCC   100 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   GGGGAGUUAGGGGAGAUUAGGAGG   1   |*|||||||||||||*|||||||| targets:43   CACCUCAAUCCCCUCCAAUCCUCC   66 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget