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BaseInfo

ncRNA ID	novel_zma_miR2632
Species	Zea mays
Class	miRNA
Genome position	Chr6:94608910-94608990 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583944;SRR2647390;SRR1583942;SRR1583943
Length	21
Mature sequence(if miRNA)	61 - UUAGAUUUCUACACAUAGUGU - 81
Stem-loop(if miRNA)	--              C                    AAC   ACUAUGUGUAGAAA CUAAGAGAUCCACAUGAAAU   U   |||||||||||||| ||||||||||||||||||||   C   UGAUACACAUCUUU GAUUCUCUAGGUGUACUUUA   U UG              A                    CAU
Stem-loop sequence	ACUAUGUGUAGAAACCUAAGAGAUCCACAUGAAAUAACUCUUACAUUUCAUGUGGAUCUCUUAGAUUUCUACACAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403248.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   ||||||||||||||||*|||| targets:9   ACACUAUGUGUAGAAACCUAA   29 Target Full Sequence	1.5	Sequence 1373 from Patent EP2074227	NA	coding protein	psRNATarget
JB163709.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   ||||||||||||||||*|||| targets:9   ACACUAUGUGUAGAAACCUAA   29 Target Full Sequence	1.5	Sequence 1373 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235378.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   ||||||||||||||||*|||| targets:9   ACACUAUGUGUAGAAACCUAA   29 Target Full Sequence	1.5	Sequence 1373 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |=||||||||||||||*|||| targets:86   AUACUAUGUGUAGAAACCUAA   106 Target Full Sequence	1.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |=||||||||||||||*|||| targets:86   AUACUAUGUGUAGAAACCUAA   106 Target Full Sequence	1.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |=||||||||||||||*|||| targets:86   AUACUAUGUGUAGAAACCUAA   106 Target Full Sequence	1.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   =|||||||||||||||*|||| targets:80   GCACUAUGUGUAGAAACCUAA   100 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   =|||||||||||||||*|||| targets:80   GCACUAUGUGUAGAAACCUAA   100 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   =|||||||||||||||*|||| targets:80   GCACUAUGUGUAGAAACCUAA   100 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
EZ062305.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   ||||||||||||||||*|||= targets:63   ACACUAUGUGUAGAAACCUAG   83 Target Full Sequence	2.5	TSA: Zea mays contig63427, mRNA sequence	NA	coding protein	psRNATarget
HI403236.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1361 from Patent EP2074227	NA	coding protein	psRNATarget
HI403193.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1318 from Patent EP2074227	NA	coding protein	psRNATarget
JB163655.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1319 from Patent EP2559767	NA	coding protein	psRNATarget
JB163654.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1318 from Patent EP2559767	NA	coding protein	psRNATarget
JB163667.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1331 from Patent EP2559767	NA	coding protein	psRNATarget
JB163699.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1363 from Patent EP2559767	NA	coding protein	psRNATarget
HI403194.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1319 from Patent EP2074227	NA	coding protein	psRNATarget
JB163710.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1374 from Patent EP2559767	NA	coding protein	psRNATarget
HI403254.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1379 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235379.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1374 from Patent EP2985353	NA	coding protein	psRNATarget
HI403210.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1335 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235337.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1332 from Patent EP2985353	NA	coding protein	psRNATarget
HI403249.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1374 from Patent EP2074227	NA	coding protein	psRNATarget
HI403245.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1370 from Patent EP2074227	NA	coding protein	psRNATarget
JB163697.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1361 from Patent EP2559767	NA	coding protein	psRNATarget
HI403238.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1363 from Patent EP2074227	NA	coding protein	psRNATarget
JB163668.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1332 from Patent EP2559767	NA	coding protein	psRNATarget
JB163706.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1370 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235368.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1363 from Patent EP2985353	NA	coding protein	psRNATarget
HI403206.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1331 from Patent EP2074227	NA	coding protein	psRNATarget
JB163671.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1335 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235336.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1331 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235324.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1319 from Patent EP2985353	NA	coding protein	psRNATarget
JB163715.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1379 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235384.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1379 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235323.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1318 from Patent EP2985353	NA	coding protein	psRNATarget
HI403207.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1332 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235366.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1361 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235375.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1370 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235340.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||=||||||||||||*|||| targets:9   ACAUUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1335 from Patent EP2985353	NA	coding protein	psRNATarget
HI403253.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||*||||||||||||*|||| targets:9   ACAGUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1378 from Patent EP2074227	NA	coding protein	psRNATarget
JB163714.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||*||||||||||||*|||| targets:9   ACAGUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1378 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235383.1	ncRNA:21   UGUGAUACACAUCUUUAGAUU   1   |||*||||||||||||*|||| targets:9   ACAGUAUGUGUAGAAACCUAA   29 Target Full Sequence	2.5	Sequence 1378 from Patent EP2985353	NA	coding protein	psRNATarget