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BaseInfo

ncRNA ID	novel_zma_miR2631
Species	Zea mays
Class	miRNA
Genome position	Chr5:10719215-10719346 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089701;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - AGGGCCUGUUUGGUUUGAUGGCUA - 24
Stem-loop(if miRNA)	--    C           G        -CU              UA  UUUUGUGCCUAAGGUUAGUU   AGGG CUGUUUGGUUU AUGGCUAA   UGCCACACUUUGCC  AC                    C   |||| ||||||||||| ||||||||   ||||||||||||||  ||   UCCC GACAAACCAAG UACUGAUU   ACGGUGUGAAACGG  AU                    U AU    C           -        UAC              --  UCCAAUCAGCAAGCUUAACU
Stem-loop sequence	AGGGCCUGUUUGGUUUGAUGGCUAACUUGCCACACUUUGCCUAACUUUUGUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGUCAUGAACCAAACAGCCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ091125.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||=|||||||||||||||||=|| targets:59   UAGUCAUCAAACCAAACAGGCUCU   82 Target Full Sequence	1.5	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||=|||||||||||||||||=|| targets:243   UAGUCAUCAAACCAAACAGGCUCU   266 Target Full Sequence	1.5	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||=|||||||||||||||*|||| targets:1779   UAGUCAUCAAACCAAACAGACCCU   1802 Target Full Sequence	1.5	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||=|||||||||||||||*|||| targets:1257   UAGUCAUCAAACCAAACAGACCCU   1280 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||*||||||||||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163656.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||*||||||||||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||*||||||||||||| targets:107   UAGGCAUCAAUCCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||||||| targets:107   UAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	1.0	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||||||||||*||||| targets:1334   UAGACAUCAAACCAAACAAGCCCU   1357 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||||||||||*||||| targets:2081   UAGACAUCAAACCAAACAAGCCCU   2104 Target Full Sequence	1.5	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||||||||||||||*||||| targets:2082   UAGACAUCAAACCAAACAAGCCCU   2105 Target Full Sequence	1.5	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235427.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|=||||||||||||||| targets:107   UAGGCAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1422 from Patent EP2985353	NA	coding protein	psRNATarget
JB163758.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|=||||||||||||||| targets:107   UAGGCAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1422 from Patent EP2559767	NA	coding protein	psRNATarget
HI403297.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|=||||||||||||||| targets:107   UAGGCAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1422 from Patent EP2074227	NA	coding protein	psRNATarget
JB163721.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1385 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235388.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1383 from Patent EP2985353	NA	coding protein	psRNATarget
JB163720.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1384 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235386.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1381 from Patent EP2985353	NA	coding protein	psRNATarget
HI403260.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1385 from Patent EP2074227	NA	coding protein	psRNATarget
HI403257.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1382 from Patent EP2074227	NA	coding protein	psRNATarget
HI403259.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1384 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235385.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1380 from Patent EP2985353	NA	coding protein	psRNATarget
JB163717.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1381 from Patent EP2559767	NA	coding protein	psRNATarget
HI403255.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1380 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235389.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1384 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235387.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1382 from Patent EP2985353	NA	coding protein	psRNATarget
JB163719.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1383 from Patent EP2559767	NA	coding protein	psRNATarget
HI403258.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1383 from Patent EP2074227	NA	coding protein	psRNATarget
JB163716.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1380 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235390.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1385 from Patent EP2985353	NA	coding protein	psRNATarget
HI403256.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1381 from Patent EP2074227	NA	coding protein	psRNATarget
JB163718.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*|=||||||||||||||| targets:107   UAGGUAGCGAACCAAACAGGCCCU   130 Target Full Sequence	2.0	Sequence 1382 from Patent EP2559767	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	2.5	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	2.5	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*|||||||||||*||||| targets:107   UAGGCAGCAAACCAAACAUGCCCU   130 Target Full Sequence	2.5	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*||*||||||||||||*|||| targets:7   UAGGCAGCAAACCAAACAGCCCCU   30 Target Full Sequence	2.5	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget
EZ108020.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:453   UCUUCAUCGACCCAAACAGGCCCU   476 Target Full Sequence	2.0	TSA: Zea mays contig43678, mRNA sequence	NA	coding protein	psRNATarget
AY108129.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:565   UCUUCAUCGACCCAAACAGGCCCU   588 Target Full Sequence	2.0	Zea mays PCO069672 mRNA sequence	NA	coding protein	psRNATarget
XM_008673397.2	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |||*=|*||||||||||||*|||| targets:110   UAGGUAGCAAACCAAACAGCCCCU   133 Target Full Sequence	2.5	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
BT039642.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:1330   UCUUCAUCGACCCAAACAGGCCCU   1353 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0035O20 mRNA, complete cds	NA	coding protein	psRNATarget
EU961223.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:1377   UYUUCAUCGACCCAAACAGGCCCU   1400 Target Full Sequence	2.0	Zea mays clone 233626 mRNA sequence	NA	coding protein	psRNATarget
EU967375.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:1454   UCUUCAUCGACCCAAACAGGCCCU   1477 Target Full Sequence	2.0	Zea mays clone 302118 serine carboxypeptidase K10B2.2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152926.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:1480   UCUUCAUCGACCCAAACAGGCCCU   1503 Target Full Sequence	2.0	Zea mays Serine carboxypeptidase K10B2.2 (LOC100279978), mRNA	NA	coding protein	psRNATarget
BT055279.1	ncRNA:24   AUCGGUAGUUUGGUUUGUCCGGGA   1   |**=||||=|*||||||||||||| targets:1480   UCUUCAUCGACCCAAACAGGCCCU   1503 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0108P15 mRNA, complete cds	NA	coding protein	psRNATarget