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BaseInfo

ncRNA ID	novel_zma_miR2628
Species	Zea mays
Class	miRNA
Genome position	Chr4:10215915-10216040 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	22
Mature sequence(if miRNA)	105 - UUGUGGGGGGCUGCAAACAUUC - 126
Stem-loop(if miRNA)	--                           G       CACCCAUAGCAGCAAUAACACAACUAAAA   UAUCUGA   AUGUUUGCAGUCCCUCACAAAAAGGAA AUAGACC                             CAU       U   ||||||||||||||||||||||||||| |||||||                             |||       G   UACAAACGUCGGGGGGUGUUUUUUCUU UAUCUGG                             UGG       G CU                           A       ---------------------------AA   ACAUCCA
Stem-loop sequence	AUGUUUGCAGUCCCUCACAAAAAGGAAGAUAGACCCACCCAUAGCAGCAAUAACACAACUAAAACAUUAUCUGAUGGACCUACAGGUAAGGUCUAUAUUCUUUUUUGUGGGGGGCUGCAAACAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235348.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
JB163689.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
HI403228.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
JB163679.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
HI403218.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:9   GGCUGUUUGCAGCCCCUCACAA   30 Target Full Sequence	1.5	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:24   GGCUGUUUGCAGCCCCUCACAA   45 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=*|||||||||||||=||||| targets:141   GGCUGUUUGCAGCCCCUCACAA   162 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:22   CUUACAAACGUCGGGGGGUGUU   1   |=**||||||||||||=||||| targets:869   GGCCGUUUGCAGCCCCUCACAA   890 Target Full Sequence	2.5	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget