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BaseInfo

ncRNA ID	novel_zma_miR2625
Species	Zea mays
Class	miRNA
Genome position	Chr4:84382535-84382662 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - UCUGCGCAGGGGCGGACUGUCCGU - 24
Stem-loop(if miRNA)	--      C G G            U G  UG    -     G    GC    ---U    C C   U   UCUGCG A G GCGGACUGUCCG G CC  GGGC CGGAC GUCC  GGCC    GGUG G GGC A   |||||| | | |||||||||||| | ||  |||| ||||| ||||  ||||    |||| | |||   GGACGC U C CGCCUGGCAGGC C GG  CCCG GCCUG CAGG  CCGG    CCAU C UCG G AG      A G G            - G  GU    C     G    --    CAGU    - C   G
Stem-loop sequence	UCUGCGCAGGGGCGGACUGUCCGUGGCCUGGGGCCGGACGGUCCGCGGCCUGGUGCGCGGCUAGGGCUCCUACCUGACGGCCGGACGGUCCGCGCCCUGGGGCCGGACGGUCCGCGCGUACGCAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001196968.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||||||||||||||||||||||| targets:1272   GCGGACAGUCCGCCCCUGCGCAGA   1295 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =|||||*|||||||||||=||||| targets:1344   GCGGACCGUCCGCCCCUGUGCAGA   1367 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||||||||||||||||||||||| targets:1272   GCGGACAGUCCGCCCCUGCGCAGA   1295 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =|||||*|||||||||||=||||| targets:1344   GCGGACCGUCCGCCCCUGUGCAGA   1367 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||||||||||||||||||||||| targets:2715   GCGGACAGUCCGCCCCUGCGCAGA   2738 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ067064.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =|||||*|||||||||||=||||| targets:32   GCGGACCGUCCGCCCCUGUGCAGA   55 Target Full Sequence	2.5	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   *|||||=||||||*|||||||||| targets:1942   CCGGACGGUCCGCGCCUGCGCAGA   1965 Target Full Sequence	2.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   *|||||=||||||*|||||||||| targets:1942   CCGGACGGUCCGCGCCUGCGCAGA   1965 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
NM_001176276.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||*=|||*=|||||||||||||= targets:942   GCGCGCAGCUCGCCCCUGCGCAGG   965 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383628 (LOC100383628), mRNA	NA	coding protein	psRNATarget
BT067874.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||*=|||*=|||||||||||||= targets:942   GCGCGCAGCUCGCCCCUGCGCAGG   965 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0178M18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542644.1	ncRNA:24   UGCCUGUCAGGCGGGGACGCGUCU   1   =||*=|||*=|||||||||||||= targets:1496   GCGCGCAGCUCGCCCCUGCGCAGG   1519 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103636822 (LOC103636822), mRNA	NA	coding protein	psRNATarget