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BaseInfo

ncRNA ID novel_zma_miR2624
Species Zea mays
Class miRNA
Genome position Chr4:50698859-50698909 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 21
Mature sequence(if miRNA) 31 - UACCCAUACCCGUCUACCCAA - 51
Stem-loop(if miRNA) --  A                - UUC
  GG UAGACGGGUAUGGGUA G   C
  || |||||||||||||||| |
  CC AUCUGCCCAUACCCAU C   A
AA  C                G CCA
Stem-loop sequence GGAUAGACGGGUAUGGGUAGUUCCAACCCGUACCCAUACCCGUCUACCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU971216.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  |||||||||||||||*|||||
targets:1496   UUGGGUAGACGGGUACGGGUA   1516

1.5 Zea mays clone 359745 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020552867.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  |||||||||||||||*|||||
targets:1825   UUGGGUAGACGGGUACGGGUA   1845

1.5 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946101), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008652911.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  **|||||||||||||||||||
targets:147   ACGGGUAGACGGGUAUGGGUA   167

0.0 PREDICTED: Zea mays DUF1997 family protein (LOC100274328), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008652909.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  **|||||||||||||||||||
targets:147   ACGGGUAGACGGGUAUGGGUA   167

0.0 PREDICTED: Zea mays DUF1997 family protein (LOC100274328), transcript variant X1, mRNA NA coding protein psRNATarget
EU958727.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  |||||||*||||||||||||*
targets:1602   UUGGGUAAACGGGUAUGGGUU   1622

2.0 Zea mays clone 1711713 mRNA sequence NA coding protein psRNATarget
EU957094.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  |||||||*||||||||||||*
targets:1765   UUGGGUAAACGGGUAUGGGUU   1785

2.0 Zea mays clone 1582602 mRNA sequence NA coding protein psRNATarget
XM_020552401.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1531   AUGAGUAGACCGGUAUGGGUA   1551

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008679607.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1533   AUGAGUAGACCGGUAUGGGUA   1553

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020552403.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1529   AUGAGUAGACCGGUAUGGGUA   1549

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008679614.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1532   AUGAGUAGACCGGUAUGGGUA   1552

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020552402.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1531   AUGAGUAGACCGGUAUGGGUA   1551

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020552400.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1534   AUGAGUAGACCGGUAUGGGUA   1554

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008679610.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1533   AUGAGUAGACCGGUAUGGGUA   1553

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008679609.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1532   AUGAGUAGACCGGUAUGGGUA   1552

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008679611.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1535   AUGAGUAGACCGGUAUGGGUA   1555

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008679606.2
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1533   AUGAGUAGACCGGUAUGGGUA   1553

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552399.1
ncRNA:21   AACCCAUCUGCCCAUACCCAU   1
  *||*||||||*||||||||||
targets:1533   AUGAGUAGACCGGUAUGGGUA   1553

2.5 PREDICTED: Zea mays serine/threonine-protein kinase SIK3 homolog (LOC103652674), transcript variant X3, mRNA NA coding protein psRNATarget
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