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BaseInfo

ncRNA ID novel_zma_miR2623
Species Zea mays
Class miRNA
Genome position Chr5:221706075-221706286 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR1583942
Length 24
Mature sequence(if miRNA) 1 - UAAGCUGGUGUGUUUGGAACCACC - 24
Stem-loop(if miRNA) --                        A   -   A       A         C        A     C          UCAC     GCUAAAAAAU   AG       
  UGGUUCCAAACAUACCGGUUUAUA CUC AGU UAUAGAA UUGGAUUCU AGUUUUUU AAAAC AAGAAGCUGG    UCCUG          AAA  CAGUUUCU
  |||||||||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||| ||||| ||||||||||    |||||          |||  |||||||U
  ACCAAGGUUUGUGUGGUCGAAUAU GGG UUA AUAUCUU GACCUAAGA UCAAAGAA UUUUG UUUUUUGAUC    AGGAC          UUU  GUCAAAGA
CC                        -   A   A       A         A        G     U          ---C     --AAACCUUC   GA       
Stem-loop sequence UGGUUCCAAACAUACCGGUUUAUAACUCAGUAUAUAGAAAUUGGAUUCUCAGUUUUUUAAAAACCAAGAAGCUGGUCACUCCUGGCUAAAAAAUAAAAGCAGUUUCUUAGAAACUGAGUUUCUUCCAAACAGGACCUAGUUUUUUUGUUUUGAAGAAACUAAGAAUCCAGAUUCUAUAAAUUAGGGUAUAAGCUGGUGUGUUUGGAACCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664904.2
ncRNA:24   CCACCAAGGUUUGUGUGGUCGAAU   1
  ***|*|||||||||||*||||||=
targets:61   UCAGCUUCCAAACACAGCAGCUUG   84

2.5 PREDICTED: Zea mays uncharacterized LOC103641558 (LOC103641558), mRNA NA coding protein psRNATarget