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BaseInfo

ncRNA ID novel_zma_miR2613
Species Zea mays
Class miRNA
Genome position Chr4:87037760-87037847 [-]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 65 - CAUGUGGAUUGGAUGGAAUUGGAA - 88
Stem-loop(if miRNA) --   G            A      AAAAAAAGAC       GAC
  CAU UGGAUUGGAUGG AUUGGA          GGAUUUU   U
  ||| |||||||||||| ||||||          |||||||   U
  GUA ACCUAACCUGUC UAACUU          UUUAGGA   G
AG   G            A      ---GUACAAA       AUC
Stem-loop sequence CAUGUGGAUUGGAUGGAAUUGGAAAAAAAAGACGGAUUUUGACUUGCUAAGGAUUUAAACAUGUUCAAUACUGUCCAAUCCAGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539455.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:278   UUCCAAUCCCAUCCAAUCCACAUG   301

1.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:1289   UUCCAAUCCCAUCCAAUCCACAUG   1312

1.0 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674543.2
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:2498   UUCCAAUCCCAUCCAAUCCACAUG   2521

1.0 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001143004.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:1408   UUCCAAUACCAUCCAAUCCACAUG   1431

1.0 Zea mays Sas10/Utp3/C1D family (pco144488), mRNA NA coding protein psRNATarget
BT037007.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:1408   UUCCAAUACCAUCCAAUCCACAUG   1431

1.0 Zea mays full-length cDNA clone ZM_BFb0151F19 mRNA, complete cds NA coding protein psRNATarget
LQ242244.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:75   UUCCAAUCCCAUCCAAUCCACAUG   98

1.0 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
HI410114.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:75   UUCCAAUCCCAUCCAAUCCACAUG   98

1.0 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
JB170575.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||||||
targets:75   UUCCAAUCCCAUCCAAUCCACAUG   98

1.0 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:4247   UUCCAAUCCCAUCCAAUCCAUAUG   4270

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:4151   UUCCAAUCCCAUCCAAUCCAUAUG   4174

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3827   UUCCAAUCCCAUCCAAUCCAUAUG   3850

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3752   UUCCAAUCCCAUCCAAUCCAUAUG   3775

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3765   UUCCAAUCCCAUCCAAUCCAUAUG   3788

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3757   UUCCAAUCCCAUCCAAUCCAUAUG   3780

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3763   UUCCAAUCCCAUCCAAUCCAUAUG   3786

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3709   UUCCAAUCCCAUCCAAUCCAUAUG   3732

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:3685   UUCCAAUCCCAUCCAAUCCAUAUG   3708

2.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
NM_001326531.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||==||||=||||=||||||||||
targets:1432   UUUUAAUUUCAUCUAAUCCACAUG   1455

2.5 Zea mays D-glycerate 3-kinase, chloroplastic-like (LOC103651345), mRNA NA coding protein psRNATarget
EU948773.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||==||||=||||=||||||||||
targets:1201   UUUUAAUUUCAUCUAAUCCACAUG   1224

2.5 Zea mays clone 384607 mRNA sequence NA coding protein psRNATarget
EU958201.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||==||||=||||=||||||||||
targets:971   UUUUAAUUUCAUCUAAUCCACAUG   994

2.5 Zea mays clone 1678209 mRNA sequence NA coding protein psRNATarget
HI409644.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*=|||||||||||||||
targets:96   UUCCAAUCUCAUCCAAUCCACAUG   119

2.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
JB170105.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*=|||||||||||||||
targets:96   UUCCAAUCUCAUCCAAUCCACAUG   119

2.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
LQ241774.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*=|||||||||||||||
targets:96   UUCCAAUCUCAUCCAAUCCACAUG   119

2.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
LQ237953.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:91   UUCCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405823.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:91   UUCCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
JB166284.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*||||||||||||=|||
targets:91   UUCCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
JB163763.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*|||||||||||||=||
targets:85   UUCCAAUCCCAUCCAAUCCACGUG   108

2.5 Sequence 1427 from Patent EP2559767 NA coding protein psRNATarget
HI403302.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*|||||||||||||=||
targets:85   UUCCAAUCCCAUCCAAUCCACGUG   108

2.5 Sequence 1427 from Patent EP2074227 NA coding protein psRNATarget
LQ235432.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||||||*|||||||||||||=||
targets:85   UUCCAAUCCCAUCCAAUCCACGUG   108

2.5 Sequence 1427 from Patent EP2985353 NA coding protein psRNATarget
XM_008682725.2
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||=|||*||||||||||||=|||
targets:355   UUCUAAUCCCAUCCAAUCCAUAUG   378

2.5 PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA NA coding protein psRNATarget
EU974368.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||=||||*=|||||||||||||||
targets:1245   UUUCAAUAUCAUCCAAUCCACAUG   1268

2.0 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU973712.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||=|||*=|||||||||||||||
targets:1285   UUCUAAUCUCAUCCAAUCCACAUG   1308

2.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||=|||*=|||||||||||||||
targets:1285   UUCUAAUCUCAUCCAAUCCACAUG   1308

2.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
BT083591.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||=|||*=|||||||||||||||
targets:1181   UUCUAAUCUCAUCCAAUCCACAUG   1204

2.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  |||=|||*=|||||||||||||||
targets:179   UUCUAAUCUCAUCCAAUCCACAUG   202

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  **=||||*=|||||||||||||||
targets:106   ACUCAAUAUCAUCCAAUCCACAUG   129

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
LQ237952.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||=||||*||||||||||||=|||
targets:91   UUUCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
JB166283.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||=||||*||||||||||||=|||
targets:91   UUUCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
HI405822.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  ||=||||*||||||||||||=|||
targets:91   UUUCAAUCCCAUCCAAUCCAUAUG   114

2.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
EU945995.1
ncRNA:24   AAGGUUAAGGUAGGUUAGGUGUAC   1
  **|||||*||||||||||||||||
targets:554   ACCCAAUCCCAUCCAAUCCACAUG   577

1.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
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