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BaseInfo

ncRNA ID	novel_zma_miR2611
Species	Zea mays
Class	miRNA
Genome position	Chr4:124928926-124929057 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR5451006;SRR2089701;SRR2089703;SRR2089704;SRR2089705
Length	24
Mature sequence(if miRNA)	109 - AGGGCUUGUUCGGUUACAUCAAUC - 132
Stem-loop(if miRNA)	--                                    AG     U                 CAU   AGGGCUUGUUCGGUUACAUCAAUCCAGAAGGGGAUU  AGGGG UUAAAUCCCCUCCUAGU   U   ||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||   UCCCGAACAAGCCAAUGUGGUUAGGUCUUCCCCUAA  UCUCC AAUUUAGGGGAGGAUCA   U AU                                    CA     U                 UUU
Stem-loop sequence	AGGGCUUGUUCGGUUACAUCAAUCCAGAAGGGGAUUAGAGGGGUUUAAAUCCCCUCCUAGUCAUUUUUUACUAGGAGGGGAUUUAAUCCUCUACAAUCCCCUUCUGGAUUGGUGUAACCGAACAAGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406796.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||||||||||||||||||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	0.0	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||||||||||||||||||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	0.0	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||||||||||||||||||||| targets:117   GAUUGAUGUAACCGAACAAGCCCU   140 Target Full Sequence	0.0	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||=|||||||||||||||||| targets:4818   GAUUGGUGUAACCGAACAAGCCCU   4841 Target Full Sequence	1.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||=|||||||||||||||||| targets:5045   GAUUGGUGUAACCGAACAAGCCCU   5068 Target Full Sequence	1.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542894.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||||=||||||||||||*||||| targets:21   GAUUGGUGUAACCGAACAUGCCCU   44 Target Full Sequence	2.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 (LOC103636763), partial mRNA	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |||*|=|||||||||||||||||| targets:1584   GAUCGGUGUAACCGAACAAGCCCU   1607 Target Full Sequence	1.0	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   *||||=||||||||||||*||||| targets:549   AAUUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   *||||=||||||||||||*||||| targets:549   AAUUGGUGUAACCGAACAUGCCCU   572 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   ||||--||||*||||||||||||||| targets:1381   GAUUUUGAUGAAACCGAACAAGCCCU   1406 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget
EZ112868.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   ||||*|*||||||||||||||=|| targets:220   GAUUUACGUAACCGAACAAGCUCU   243 Target Full Sequence	2.5	TSA: Zea mays contig48529, mRNA sequence	NA	coding protein	psRNATarget
EZ110342.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   *|||||**|||||||||||||||| targets:35   AAUUGAAAUAACCGAACAAGCCCU   58 Target Full Sequence	2.0	TSA: Zea mays contig46002, mRNA sequence	NA	coding protein	psRNATarget
EU949284.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |=||*=*||||||||||||||||| targets:659   GGUUAGCGUAACCGAACAAGCCCU   682 Target Full Sequence	2.0	Zea mays clone 400720 mRNA sequence	NA	coding protein	psRNATarget
DQ244893.1	ncRNA:24   CUAACUACAUUGGCUUGUUCGGGA   1   |=||*=*||||||||||||||||| targets:759   GGUUAGCGUAACCGAACAAGCCCU   782 Target Full Sequence	2.0	Zea mays clone 11585 mRNA sequence	NA	coding protein	psRNATarget
LQ235258.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   *|||--|||*||||||||||=||||| targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129 Target Full Sequence	2.5	Sequence 1253 from Patent EP2985353	NA	coding protein	psRNATarget
JB163589.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   *|||--|||*||||||||||=||||| targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129 Target Full Sequence	2.5	Sequence 1253 from Patent EP2559767	NA	coding protein	psRNATarget
HI403128.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   *|||--|||*||||||||||=||||| targets:104   CAUUCCGAUAUAACCGAACAGGCCCU   129 Target Full Sequence	2.5	Sequence 1253 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   |||*--||*||||||||||||||||| targets:109   GAUCCAGACGUAACCGAACAAGCCCU   134 Target Full Sequence	1.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   CUAA--CUACAUUGGCUUGUUCGGGA   1   ||||--||**|||||||||||||||| targets:210   GAUUUAGAGCUAACCGAACAAGCCCU   235 Target Full Sequence	2.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget