| ncRNA ID | osa-miR1432-5p |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr7:23401702-23401810 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 83 - AUCAGGAGAGAUGACACCGAC - 103 |
| Stem-loop(if miRNA) |
A A GA -C ------ CU C CCUGUG UCAGG GAGAUGACACC CAUCG CGGA AUUCGUU UGGU U |||||| ||||| ||||||||||| ||||| |||| ||||||| |||| U GGAUAC AGUCC CUCUACUGUGG GUAGU GCCU UAAGUAG ACCG G A C AC UU GGUAGU -U U |
| Stem-loop sequence | CCUGUGAUCAGGAGAGAUGACACCGACAUCGCCGGAAUUCGUUCUUGGUCUUGUGCCAUGAUGAAUUGAUGGUCCGUUUGAUGCAGGUGUCAUCUCCCCUGAACAUAGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015774180.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group probable calcium-binding protein CML17 (LOC107276312), mRNA | probable calcium-binding protein CML17(LOC107276312) | coding protein | psRNATarget | |||||||||
| AK119951.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:002-184-C05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| CT833104.1 |
|
1.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051F18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015774511.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group calmodulin-like protein 2 (LOC4334549), mRNA | calmodulin-like protein 2(LOC4334549) | coding protein | psRNATarget | |||||||||
| XM_015774720.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group probable calcium-binding protein CML21 (LOC107278243), mRNA | probable calcium-binding protein CML21(LOC107278243) | coding protein | psRNATarget | |||||||||
| AK067259.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013095I07, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK120495.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013120H18, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015781183.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4336912), mRNA | calcium-transporting ATPase 8, plasma membrane-type(LOC4336912) | coding protein | psRNATarget | |||||||||
| XM_015794313.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC9267724), mRNA | calcium-transporting ATPase 8, plasma membrane-type(LOC9267724) | coding protein | psRNATarget | |||||||||
| AK121509.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J033023K22, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015770644.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4328480), transcript variant X1, mRNA | calcium-transporting ATPase 8, plasma membrane-type(LOC4328480) | coding protein | psRNATarget | |||||||||
| XM_015770645.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4328480), transcript variant X2, mRNA | calcium-transporting ATPase 8, plasma membrane-type(LOC4328480) | coding protein | psRNATarget |
| 1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
| 2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |
| 3 | PMID:18323537
"Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"; Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ; Genome Res. 18:571-584(2008). |
| 4 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |