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BaseInfo

ncRNA ID	novel_zma_miR2587
Species	Zea mays
Class	miRNA
Genome position	Chr4:138228345-138228423 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR4237222;SRR4237224;SRR2089703
Length	24
Mature sequence(if miRNA)	56 - AAGAUCUAUGGCACCGAGGUACGU - 79
Stem-loop(if miRNA)	--         C              C      GU   C   GUACCUCGG GCCGUAGAUCUUGG GCCGAG  CGG G   ||||||||| |||||||||||||| ||||||  ||| C   CAUGGAGCC CGGUAUCUAGAACC CGGCUC  GUU C UG         A              A      UU   A
Stem-loop sequence	GUACCUCGGCGCCGUAGAUCUUGGCGCCGAGGUCGGCGCCAUUGUUCUCGGCACCAAGAUCUAUGGCACCGAGGUACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544295.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:228   ACGUACCUCGGCGCCAUAGAUCUU   251 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |||||||||||*|||||||||||| targets:935   ACGUACCUCGGCGCCAUAGAUCUU   958 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   |=|||||||||*|||||||||||| targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
EZ057853.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:207   AC-UUCCUCGGUGCCAUAGAUAUU   229 Target Full Sequence	1.5	TSA: Zea mays contig58975, mRNA sequence	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:282   AC--AUCUCGGCGCCAUAGAUCUU   303 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
BT035259.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:320   AC-UUCCUCGGUGCCAUAGAUAUU   342 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0052A11 mRNA, complete cds	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:1674   AC--AUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:1674   AC--AUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
BT018837.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:1563   AC-UUCCUCGGUGCCAUAGAUAUU   1585 Target Full Sequence	1.5	Zea mays clone EL01N0552G07.d mRNA sequence	NA	coding protein	psRNATarget
NM_001138569.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:1891   AC-UUCCUCGGUGCCAUAGAUAUU   1913 Target Full Sequence	1.5	Zea mays 3-oxoacyl-[acyl-carrier-protein] synthase II chloroplastic (pco121523), mRNA	NA	coding protein	psRNATarget
BT035716.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:1891   AC-UUCCUCGGUGCCAUAGAUAUU   1913 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0079I16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:1756   AC--AUCUCGGCGCCAUAGAUCUU   1777 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU953055.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:1925   AC-UUCCUCGGUGCCAUAGAUAUU   1947 Target Full Sequence	1.5	Zea mays clone 1378666 3-oxoacyl-synthase I mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:1781   AC--AUCUCGGCGCCAUAGAUCUU   1802 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||--|=|||||*|||||||||||| targets:1788   AC--AUCUCGGCGCCAUAGAUCUU   1809 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY103998.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   ||-|*||||||||||||||||*|| targets:1924   AC-UUCCUCGGUGCCAUAGAUAUU   1946 Target Full Sequence	1.5	Zea mays PCO121523 mRNA sequence	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   *||-|*|||||*|||||||||||| targets:129   CCG-AGCUCGGCGCCAUAGAUCUU   151 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   *||-|*|||||*|||||||||||| targets:127   CCG-AGCUCGGCGCCAUAGAUCUU   149 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   *||-|*|||||*|||||||||||| targets:187   CCG-AGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   *||-|*|||||*|||||||||||| targets:187   CCG-AGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UGCAUGGAGCCACGGUAUCUAGAA   1   *||-|*|||||*|||||||||||| targets:781   CCG-AGCUCGGCGCCAUAGAUCUU   803 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget