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BaseInfo

ncRNA ID novel_zma_miR2586
Species Zea mays
Class miRNA
Genome position Chr4:128928908-128929031 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 22
Mature sequence(if miRNA) 1 - UGAUUGUGUAAUGUGUUGGCUA - 22
Stem-loop(if miRNA) --UGA       A     U    AUUCACUU     -        U    -----A   GACAUAUCAAG
     UUGUGUA UGUGU GGCU        UCUCC AAAUAUGU GCAU      AUU           U
     ||||||| ||||| ||||        ||||| |||||||| ||||      |||           U
     AACACAU ACACA CCGG        GGGGG UUUAUACA CGUA      ACU           A
UUAUG       -     -    --------     A        -    CUCAAA   CUAGAAGUAUA
Stem-loop sequence UGAUUGUGUAAUGUGUUGGCUAUUCACUUUCUCCAAAUAUGUUGCAUAAUUGACAUAUCAAGUUAAUAUGAAGAUCUCAAAACUCAUGCACAUAUUUAGGGGGGGCCACACAUACACAAGUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ068170.1
ncRNA:22   AUCGGUUG-UGUAAUGUGUUAGU   1
  ||-|||=|-||||||||||||||
targets:218   UA-CCAGCGACAUUACACAAUCA   239

3.0 TSA: Zea mays contig03805, mRNA sequence NA coding protein psRNATarget