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BaseInfo

ncRNA ID	novel_zma_miR2581
Species	Zea mays
Class	miRNA
Genome position	Chr3:82701624-82701752 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - GGGCCUGUUUGGUUUGAUGGCUAA - 24
Stem-loop(if miRNA)	-   C            A  G    -CU  A           UA  UUUUGUGCCUAAGGUUAGUU  GGG CUGUUUGGUUUG UG CUAA   UG CACACUUUGCC  AC                    C  ||| |||||||||||| || ||||   || |||||||||||  ||  CCC GAUAAACCAAGC AC GAUU   AC GUGUGAAACGG  AU                    U U   C            -  G    UAU  G           --  UCCAAUCAGCAAGCUUAACU
Stem-loop sequence	GGGCCUGUUUGGUUUGAUGGCUAACUUGACACACUUUGCCUAACUUUUGUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCAUAUUUAGGCACGAACCAAAUAGCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ091125.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||=|||||||||||||||||=| targets:58   UUAGUCAUCAAACCAAACAGGCUC   81 Target Full Sequence	1.5	TSA: Zea mays contig26772, mRNA sequence	NA	coding protein	psRNATarget
EU943361.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||=|||||||||||||||||=| targets:242   UUAGUCAUCAAACCAAACAGGCUC   265 Target Full Sequence	1.5	Zea mays clone 1614023 mRNA sequence	NA	coding protein	psRNATarget
XM_008681615.2	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||=|||||||||||||||*||| targets:1778   UUAGUCAUCAAACCAAACAGACCC   1801 Target Full Sequence	1.5	PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||=|||||||||||||||*||| targets:1256   UUAGUCAUCAAACCAAACAGACCC   1279 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
HI403195.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||*|||||||||||| targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129 Target Full Sequence	1.5	Sequence 1320 from Patent EP2074227	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235325.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||*|||||||||||| targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129 Target Full Sequence	1.5	Sequence 1320 from Patent EP2985353	NA	coding protein	psRNATarget
JB163656.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||*|||||||||||| targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129 Target Full Sequence	1.5	Sequence 1320 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||||||| targets:106   UUAGGCAGCAAACCAAACAGGCCC   129 Target Full Sequence	1.0	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||||||||||*|||| targets:1333   UUAGACAUCAAACCAAACAAGCCC   1356 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||||||||||*|||| targets:2080   UUAGACAUCAAACCAAACAAGCCC   2103 Target Full Sequence	1.5	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||||||||||||||*|||| targets:2081   UUAGACAUCAAACCAAACAAGCCC   2104 Target Full Sequence	1.5	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget
JB163758.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|=|||||||||||||| targets:106   UUAGGCAGCGAACCAAACAGGCCC   129 Target Full Sequence	2.0	Sequence 1422 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235427.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|=|||||||||||||| targets:106   UUAGGCAGCGAACCAAACAGGCCC   129 Target Full Sequence	2.0	Sequence 1422 from Patent EP2985353	NA	coding protein	psRNATarget
HI403297.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|=|||||||||||||| targets:106   UUAGGCAGCGAACCAAACAGGCCC   129 Target Full Sequence	2.0	Sequence 1422 from Patent EP2074227	NA	coding protein	psRNATarget
JB163717.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1381 from Patent EP2559767	NA	coding protein	psRNATarget
HI403256.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1381 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235388.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1383 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235385.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1380 from Patent EP2985353	NA	coding protein	psRNATarget
HI403258.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1383 from Patent EP2074227	NA	coding protein	psRNATarget
HI403257.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1382 from Patent EP2074227	NA	coding protein	psRNATarget
JB163719.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1383 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235389.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1384 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235390.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1385 from Patent EP2985353	NA	coding protein	psRNATarget
JB163716.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1380 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235386.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1381 from Patent EP2985353	NA	coding protein	psRNATarget
HI403259.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1384 from Patent EP2074227	NA	coding protein	psRNATarget
HI403255.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1380 from Patent EP2074227	NA	coding protein	psRNATarget
JB163721.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1385 from Patent EP2559767	NA	coding protein	psRNATarget
JB163718.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1382 from Patent EP2559767	NA	coding protein	psRNATarget
HI403260.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1385 from Patent EP2074227	NA	coding protein	psRNATarget
JB163720.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1384 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235387.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*=|*|=|||||||||||||| targets:106   UUAGGUAGCGAACCAAACAGGCCC   129 Target Full Sequence	3.0	Sequence 1382 from Patent EP2985353	NA	coding protein	psRNATarget
EU967316.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   |||**|||||||||||||||||=* targets:584   UUAUGCAUCAAACCAAACAGGCUG   607 Target Full Sequence	2.5	Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||*|||| targets:106   UUAGGCAGCAAACCAAACAUGCCC   129 Target Full Sequence	2.5	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||*|||| targets:106   UUAGGCAGCAAACCAAACAUGCCC   129 Target Full Sequence	2.5	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*|||||||||||*|||| targets:106   UUAGGCAGCAAACCAAACAUGCCC   129 Target Full Sequence	2.5	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
AY110609.1	ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGG   1   ||||*||*||||||||||||*||| targets:6   UUAGGCAGCAAACCAAACAGCCCC   29 Target Full Sequence	2.5	Zea mays CL49281_1 mRNA sequence	NA	coding protein	psRNATarget