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BaseInfo

ncRNA ID	novel_zma_miR2578
Species	Zea mays
Class	miRNA
Genome position	Chr3:16528201-16528271 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089704
Length	24
Mature sequence(if miRNA)	1 - AUAAGGUGGUGAUGGAUUAACUCA - 24
Stem-loop(if miRNA)	- GA GAC      -    AUA   GUACUAAACAA  G  U   UCCAUU CCAC   UUA           U  |  |   |||||| ||||   |||  C  A   AGGUAG GGUG   AUA           U A UC AUU      U    -GA   AGAAGUAUCAA
Stem-loop sequence	GGAUGACUCCAUUCCACAUAUUAGUACUAAACAAUUAACUAUGAAGAAUAAGGUGGUGAUGGAUUAACUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664497.2	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||=|||||||| targets:164   UGAGUUAAUCCAUCAUCACCUUAU   187 Target Full Sequence	1.5	PREDICTED: Zea mays F-box protein SKIP19 (LOC103641127), mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||||||=|||=||||||||||||| targets:1104   UGAGUUGAUCUAUCACCACCUUAU   1127 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||||||=|||=||||||||||||| targets:1103   UGAGUUGAUCUAUCACCACCUUAU   1126 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054365.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||*|||| targets:1223   UGAGUUAAUCCAUCACCACAUUAU   1246 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0002L04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152506.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||*|||| targets:1223   UGAGUUAAUCCAUCACCACAUUAU   1246 Target Full Sequence	1.5	Zea mays OSJNBb0091E11.19-like protein (LOC100279506), mRNA	NA	coding protein	psRNATarget
NM_001155699.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||||*|| targets:962   UGAGUUAAUCCAUCACCACCUCAU   985 Target Full Sequence	1.5	Zea mays transmembrane BAX inhibitor motif-containing protein 4 (LOC100282793), mRNA	NA	coding protein	psRNATarget
EU962334.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||||*|| targets:962   UGAGUUAAUCCAUCACCACCUCAU   985 Target Full Sequence	1.5	Zea mays clone 241846 transmembrane BAX inhibitor motif-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
EU960301.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||||*|| targets:921   UGAGUUAAUCCAUCACCACCUCAU   944 Target Full Sequence	1.5	Zea mays clone 223336 transmembrane BAX inhibitor motif-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
BT088363.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||||||||||||||||||*|| targets:867   UGAGUUAAUCCAUCACCACCUCAU   890 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0160B09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539260.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||||||=||||||||||||||*|| targets:1459   UGAGUUGAUCCAUCACCACCUCAU   1482 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100502252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||||||=||||||||||||||*|| targets:124   UGAGUUGAUCCAUCACCACCUCAU   147 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001319048.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||*=|||=||||||||||||| targets:2305   UGAGUCGAUCUAUCACCACCUUAU   2328 Target Full Sequence	3.0	Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), mRNA	NA	coding protein	psRNATarget
XM_020549921.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||*=|||=||||||||||||| targets:2243   UGAGUCGAUCUAUCACCACCUUAU   2266 Target Full Sequence	3.0	PREDICTED: Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068011.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |||||*=|||=||||||||||||| targets:1202   UGAGUCGAUCUAUCACCACCUUAU   1225 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165701.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |*|||||||||||||||||||*|| targets:1142   UAAGUUAAUCCAUCACCACCUCAU   1165 Target Full Sequence	1.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100304258), mRNA	NA	coding protein	psRNATarget
BT060616.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   |*|||||||||||||||||||*|| targets:1142   UAAGUUAAUCCAUCACCACCUCAU   1165 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0024O19 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238264.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||*|||=|||||||||||||*||| targets:52   UGUGUUGAUCCAUCACCACCCUAU   75 Target Full Sequence	2.5	Sequence 4259 from Patent EP2985353	NA	coding protein	psRNATarget
HI406134.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||*|||=|||||||||||||*||| targets:52   UGUGUUGAUCCAUCACCACCCUAU   75 Target Full Sequence	2.5	Sequence 4259 from Patent EP2074227	NA	coding protein	psRNATarget
JB166595.1	ncRNA:24   ACUCAAUUAGGUAGUGGUGGAAUA   1   ||*|||=|||||||||||||*||| targets:52   UGUGUUGAUCCAUCACCACCCUAU   75 Target Full Sequence	2.5	Sequence 4259 from Patent EP2559767	NA	coding protein	psRNATarget