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BaseInfo

ncRNA ID novel_zma_miR2577
Species Zea mays
Class miRNA
Genome position Chr3:30098364-30098450 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR5105959
Length 22
Mature sequence(if miRNA) 66 - UAGGGCUAGUUUGGAGGACAGG - 87
Stem-loop(if miRNA) --U      A      A       G             -A AUG
   AGGGCU GUUUGG GGACAGG AAUUGGAGGGGAU  C   G
   |||||| |||||| ||||||| |||||||||||||  |
   UCCCGA UAAACC CCUGUCC UUAACUUCCCCUA  G   A
GAU      C      A       A             CG AGG
Stem-loop sequence UAGGGCUAGUUUGGAGGACAGGGAAUUGGAGGGGAUACAUGGAGGAGGCAUCCCCUUCAAUUACCUGUCCACCAAAUCAGCCCUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001349004.1
ncRNA:22   GGACAGGAGGUUUGAUCGGGAU   1
  =*|||||*=|||||||||||||
targets:379   UAUGUCCAUCAAACUAGCCCUA   400

2.0 Zea mays uncharacterized LOC100277479 (LOC100277479), transcript variant 3, mRNA NA coding protein psRNATarget
EZ068772.1
ncRNA:22   GGACAGGAGGUUUGAUCGGGAU   1
  **||*==|||||||||||||||
targets:50   AGUGGUUUCCAAACUAGCCCUA   71

3.0 TSA: Zea mays contig04407, mRNA sequence NA coding protein psRNATarget