ncRNA ID | novel_zma_miR2577 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr3:30098364-30098450 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089713;SRR5105959 |
Length | 22 |
Mature sequence(if miRNA) | 66 - UAGGGCUAGUUUGGAGGACAGG - 87 |
Stem-loop(if miRNA) |
--U      A      A       G             -A AUG    AGGGCU GUUUGG GGACAGG AAUUGGAGGGGAU  C   G    |||||| |||||| ||||||| |||||||||||||  |    UCCCGA UAAACC CCUGUCC UUAACUUCCCCUA  G   A GAU      C      A       A             CG AGG |
Stem-loop sequence | UAGGGCUAGUUUGGAGGACAGGGAAUUGGAGGGGAUACAUGGAGGAGGCAUCCCCUUCAAUUACCUGUCCACCAAAUCAGCCCUUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001349004.1 |
|
2.0 | Zea mays uncharacterized LOC100277479 (LOC100277479), transcript variant 3, mRNA | NA | coding protein | psRNATarget | |||||||||
EZ068772.1 |
|
3.0 | TSA: Zea mays contig04407, mRNA sequence | NA | coding protein | psRNATarget |