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BaseInfo

ncRNA ID	novel_zma_miR2575
Species	Zea mays
Class	miRNA
Genome position	Chr5:189801141-189801270 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385
Length	24
Mature sequence(if miRNA)	1 - AGACACUCGGCAAAGCCUUUGCCG - 24
Stem-loop(if miRNA)	--A              C         U   ---------AAC              A   G  AA  A    GACACUCGGCAAAG CUUUGCCGA UGU            ACUCGGCAAAGAAC CUU GC  AU U    |||||||||||||| ||||||||| |||            |||||||||||||| ||| ||  || U    CUGUGAGCCGUUUC GAAACGGCU ACA            UGAGCCGUUUCUUG GAA CG  UA U AAA              A         C   GGCUUUUUUUCA              G   A  GC  C
Stem-loop sequence	AGACACUCGGCAAAGCCUUUGCCGAUUGUAACACUCGGCAAAGAACACUUGGCAAAUAUUUCAUCGGCAAAGGGUUCUUUGCCGAGUACUUUUUUUCGGACACUCGGCAAAGACUUUGCCGAGUGUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052892.1	ncRNA:24   GCCGUUUCCGAAACGGCUCACAGA   1   |||||||||||||||||||||||* targets:92   CGGCAAAGGCUUUGCCGAGUGUCA   115 Target Full Sequence	1.0	TSA: Zea mays contig54013, mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   GCCGUUUCCGAAACGGCUCACAGA   1   ||*||||**||||||||||||||* targets:622   CGUCAAAAACUUUGCCGAGUGUCA   645 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GCCGUUUC---CGAAACGGCUCACAGA   1   |*||||||---|||||||||||||||| targets:49   CAGCAAAGAAGGCUUUGCCGAGUGUCU   75 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GCCGUUUC---CGAAACGGCUCACAGA   1   |*||||||---|||||||||||||||| targets:49   CAGCAAAGAAGGCUUUGCCGAGUGUCU   75 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GCCGUUUC---CGAAACGGCUCACAGA   1   |*||||||---|||||||||||||||| targets:49   CAGCAAAGAAGGCUUUGCCGAGUGUCU   75 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   GCC---GUUUCCGAAACGGCUCACAGA   1   =||---===||*||||||||||||||* targets:10   UGGAGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	3.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   GCC---GUUUCCGAAACGGCUCACAGA   1   =||---===||*||||||||||||||* targets:10   UGGAGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	3.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   GCC---GUUUCCGAAACGGCUCACAGA   1   =||---===||*||||||||||||||* targets:10   UGGAGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	3.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB167186.1	ncRNA:22   CGUUUCCGAAACGGCUCACAGA   1   *===||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	3.0	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
HI406725.1	ncRNA:22   CGUUUCCGAAACGGCUCACAGA   1   *===||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	3.0	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:22   CGUUUCCGAAACGGCUCACAGA   1   *===||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	3.0	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget