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BaseInfo

ncRNA ID	osa-miR6247
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:19977417-19977519 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGGCUGAUUGACCUAAUGGCA - 31
Stem-loop(if miRNA)	G     CG UU                                ---A  U     GUCUA  G  UGUGCCAUUAGGUCAAUCAGCCAGCUCUGGCU    GU UAUC  |||||  |  ||||||||||||||||||||||||||||||||    || |||U  CAGAU  U  ACACGGUAAUCCAGUUAGUCGGUCGAGACCGA    CG AUGG -     AU --                                GAAA  U
Stem-loop sequence	GGUCUACGGUUUGUGCCAUUAGGUCAAUCAGCCAGCUCUGGCUAGUUUAUCUGGUAUGCAAAGAGCCAGAGCUGGCUGAUUGACCUAAUGGCACAUUAUAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789977.1	ncRNA:21   ACGGUAAUCCAGUUAGUCGGU   1   ||||||||||||||||||||| targets:1637   UGCCAUUAGGUCAAUCAGCCA   1657 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 716B1 (LOC4343391), transcript variant X1, mRNA	cytochrome P450 716B1(LOC4343391)	coding protein	psRNATarget
XM_015789980.1	ncRNA:21   ACGGUAAUCCAGUUAGUCGGU   1   ||||||||||||||||||||| targets:1666   UGCCAUUAGGUCAAUCAGCCA   1686 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 716B1 (LOC4343391), transcript variant X4, mRNA	cytochrome P450 716B1(LOC4343391)	coding protein	psRNATarget
XM_015789979.1	ncRNA:21   ACGGUAAUCCAGUUAGUCGGU   1   ||||||||||||||||||||| targets:1709   UGCCAUUAGGUCAAUCAGCCA   1729 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 716B1 (LOC4343391), transcript variant X3, mRNA	cytochrome P450 716B1(LOC4343391)	coding protein	psRNATarget
XM_015789978.1	ncRNA:21   ACGGUAAUCCAGUUAGUCGGU   1   ||||||||||||||||||||| targets:1731   UGCCAUUAGGUCAAUCAGCCA   1751 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 716B1 (LOC4343391), transcript variant X2, mRNA	cytochrome P450 716B1(LOC4343391)	coding protein	psRNATarget
XM_015789981.1	ncRNA:21   ACGGUAAUCCAGUUAGUCGGU   1   ||||||||||||||||||||| targets:1738   UGCCAUUAGGUCAAUCAGCCA   1758 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 716B1 (LOC4343391), transcript variant X5, mRNA	cytochrome P450 716B1(LOC4343391)	coding protein	psRNATarget

Reference

1	PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice"; Liu Q; Funct Integr Genomics. 12:649-658(2012).