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BaseInfo

ncRNA ID	novel_zma_miR2568
Species	Zea mays
Class	miRNA
Genome position	Chr5:170642816-170642938 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647388
Length	23
Mature sequence(if miRNA)	1 - CCGCCACUAGAAAUCAUAUUUCU - 23
Stem-loop(if miRNA)	--        A      A          G   A            C   C  G           CCGCCACU GAAAUC UAUUUCUACA GCG UUCCUUAAGAAA CCG CU UAGAAAUCC   |||||||| |||||| |||||||||| ||| |||||||||||| ||| || ||||||||A   GGCGGUGA CUUUAG AUAAGGAUGU CGC AAGGAAUUCUUU GGU GA AUCUUUAGU UU        C      C          A   G            U   C  G
Stem-loop sequence	CCGCCACUAGAAAUCAUAUUUCUACAGGCGAUUCCUUAAGAAACCCGCCUGUAGAAAUCCAUGAUUUCUAGAGCUGGUUUUCUUAAGGAAGCGCAUGUAGGAAUACGAUUUCCAGUGGCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403085.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |||||||||||||||||||*||| targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95 Target Full Sequence	1.5	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
JB163546.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |||||||||||||||||||*||| targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95 Target Full Sequence	1.5	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |||||||||||||||||||*||| targets:73   AGAAAUAUGAUUUCUAGUGUCGG   95 Target Full Sequence	1.5	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:23   UCUUUA--UACUAAAGAUCACCGCC   1   |*||||--||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGG   95 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:23   UCUUUA--UACUAAAGAUCACCGCC   1   |*||||--||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGG   95 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:23   UCUUUA--UACUAAAGAUCACCGCC   1   |*||||--||||||||||||||||| targets:71   AAAAAUCCAUGAUUUCUAGUGGCGG   95 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI403012.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |*|||*||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGG   23 Target Full Sequence	1.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
JB163473.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |*|||*||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGG   23 Target Full Sequence	1.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:23   UCUUUAUACUAAAGAUCACCGCC   1   |*|||*||||||||||||||||| targets:1   AUAAAAAUGAUUUCUAGUGGCGG   23 Target Full Sequence	1.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget