Search result

BaseInfo

ncRNA ID	novel_zma_miR2564
Species	Zea mays
Class	miRNA
Genome position	Chr3:220668926-220668981 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	33 - AUUGAAGGGGAUUGAGGUGGAAAU - 56
Stem-loop(if miRNA)	--              AG U      AA   AUUGAAGGGGAUUG  G GGAAAU  A   ||||||||||||||  | ||||||   UAACUUCCCCUAAC  C CCUUUA  C CC              CU U      AU
Stem-loop sequence	AUUGAAGGGGAUUGAGGUGGAAAUAAACUAAUUUCCUCUCCAAUCCCCUUCAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942844.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||||||||||||=||||||| targets:192   AUUUCCACCUCAAUCCUCUUCAAU   215 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
BT038305.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   |||||||=|||||||||=|||||| targets:608   AUUUCCAUCUCAAUCCCUUUCAAU   631 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541843.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   |||||||=|||||||||=|||||| targets:1613   AUUUCCAUCUCAAUCCCUUUCAAU   1636 Target Full Sequence	2.5	PREDICTED: Zea mays putative actin family protein (LOC100191561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:64   AUUUCCCCCUUAAUCCCCUUCAAU   87 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:64   AUUUCCCCCUUAAUCCCCUUCAAU   87 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:64   AUUUCCCCCUUAAUCCCCUUCAAU   87 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||=||||||||||||||*|||| targets:72   AUUUUCACCUCAAUCCCCUCCAAU   95 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||=||||||||||||||*|||| targets:38   AUUUUCACCUCAAUCCCCUCCAAU   61 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:818   AUUUCCCCCUUAAUCCCCUUCAAU   841 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:857   AUUUCCCCCUUAAUCCCCUUCAAU   880 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:862   AUUUCCCCCUUAAUCCCCUUCAAU   885 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|||=||||||||||||| targets:862   AUUUCCCCCUUAAUCCCCUUCAAU   885 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||*|||||||||||*||||||| targets:58   AUUUACACCUCAAUCCACUUCAAU   81 Target Full Sequence	1.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||*|||||||||||*||||||| targets:58   AUUUACACCUCAAUCCACUUCAAU   81 Target Full Sequence	1.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||*|||||||||||*||||||| targets:58   AUUUACACCUCAAUCCACUUCAAU   81 Target Full Sequence	1.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   =|||||*|=||||||||||||||* targets:229   GUUUCCCCUUCAAUCCCCUUCAAG   252 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   ||||---|=*||||||||||||||||| targets:78   AUUUAAUCUCCCUCAAUCCCCUUCAAU   104 Target Full Sequence	2.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   ||||---|=*||||||||||||||||| targets:78   AUUUAAUCUCCCUCAAUCCCCUUCAAU   104 Target Full Sequence	2.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   ||||---|=*||||||||||||||||| targets:78   AUUUAAUCUCCCUCAAUCCCCUUCAAU   104 Target Full Sequence	2.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ||||||*|=*|||||||||||||| targets:55   AUUUCCUCUCCAAUCCCCUUCAAU   78 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   |*||||||||=||||||||*|||| targets:288   AAUUCCACCUUAAUCCCCUCCAAU   311 Target Full Sequence	2.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   |*||||||||=||||||||*|||| targets:396   AAUUCCACCUUAAUCCCCUCCAAU   419 Target Full Sequence	2.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   |||*---||||||||||||||*||||| targets:68   AUUGAAACCACCUCAAUCCCCCUCAAU   94 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   |||*---||||||||||||||*||||| targets:68   AUUGAAACCACCUCAAUCCCCCUCAAU   94 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UAAA---GGUGGAGUUAGGGGAAGUUA   1   |||*---||||||||||||||*||||| targets:68   AUUGAAACCACCUCAAUCCCCCUCAAU   94 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ***|||==*||||||||||||||| targets:1412   CAAUCCGUAUCAAUCCCCUUCAAU   1435 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ***|||==*||||||||||||||| targets:1456   CAAUCCGUAUCAAUCCCCUUCAAU   1479 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ***|||==*||||||||||||||| targets:1474   CAAUCCGUAUCAAUCCCCUUCAAU   1497 Target Full Sequence	3.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ***|||==*||||||||||||||| targets:1488   CAAUCCGUAUCAAUCCCCUUCAAU   1511 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UAAAGGUGGAGUUAGGGGAAGUUA   1   ***|||==*||||||||||||||| targets:1488   CAAUCCGUAUCAAUCCCCUUCAAU   1511 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget