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BaseInfo

ncRNA ID novel_zma_miR2563
Species Zea mays
Class miRNA
Genome position Chr3:234668101-234668162 [+]
Reference genome RefGen_v4
Source SRR2089713;SRR1997866;SRR5451006;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - AGCACUCGGCAAAGGGACUGGCAA - 24
Stem-loop(if miRNA) -----   A            ACU   -AA    
     AGC CUCGGCAAAGGG   GGC   AGUGG
     ||| ||||||||||||   |||   ||||A
     UCG GAGCUGUUUCUU   CCG   UCACC
CCUGA   C            ---   AAG    
Stem-loop sequence AGCACUCGGCAAAGGGACUGGCAAAGUGGACCACUGAAGCCUUCUUUGUCGAGCGCUAGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ067174.1
ncRNA:24   AA-CGGUCAGGGAAACGGCUCACGA   1
  ||-||||||*=*|||||||||||||
targets:53   UUCGCCAGUAUAUUUGCCGAGUGCU   77

3.0 TSA: Zea mays contig02808, mRNA sequence NA coding protein psRNATarget
HI409785.1
ncRNA:24   AACGGUCAGGGAAACGGCUCACGA   1
  *||=*||*==||||||||||||||
targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97

3.0 Sequence 7910 from Patent EP2074227 NA coding protein psRNATarget
JB170246.1
ncRNA:24   AACGGUCAGGGAAACGGCUCACGA   1
  *||=*||*==||||||||||||||
targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97

3.0 Sequence 7910 from Patent EP2559767 NA coding protein psRNATarget
LQ241915.1
ncRNA:24   AACGGUCAGGGAAACGGCUCACGA   1
  *||=*||*==||||||||||||||
targets:74   AUGUGAGGUUCUUUGCCGAGUGCU   97

3.0 Sequence 7910 from Patent EP2985353 NA coding protein psRNATarget