ncRNA ID | osa-miR2275c |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr7:16719772-16719880 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 77 - AGAAUUGGAGGAAAACAAACUGA - 99 |
Stem-loop(if miRNA) |
A     A      -               A    U  C      -A    U   A  CUGGA GUGAGA AUUGGAGGAAAACAA CUGA UG UGGUUG  UGCU GCA C  ||||| |||||| ||||||||||||||| |||| || ||||||  |||| |||  GACUU CACUCU UAACCUCUUUUUGUU GACU AU AUUAAC  ACGG UGU A G     C      A               A    U  A      AA    -   G |
Stem-loop sequence | ACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGAUGCUUGCAACAGUGUGGCAAACAAUUAAUAUUCAGAUUGUUUUUCUCCAAUAUCUCACCUUCAGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK063039.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:001-110-D03, full insert sequence | NA | coding protein | psRNATarget |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |