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BaseInfo

ncRNA ID osa-miR2275c
Species Oryza sativa
Class miRNA
Genome position Chr7:16719772-16719880 [-]
Reference genome MSU7
Source miRBase
Length 23
Mature sequence(if miRNA) 77 - AGAAUUGGAGGAAAACAAACUGA - 99
Stem-loop(if miRNA) A     A      -               A    U  C      -A    U   A
 CUGGA GUGAGA AUUGGAGGAAAACAA CUGA UG UGGUUG  UGCU GCA C
 ||||| |||||| ||||||||||||||| |||| || ||||||  |||| |||
 GACUU CACUCU UAACCUCUUUUUGUU GACU AU AUUAAC  ACGG UGU A
G     C      A               A    U  A      AA    -   G
Stem-loop sequence ACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGAUGCUUGCAACAGUGUGGCAAACAAUUAAUAUUCAGAUUGUUUUUCUCCAAUAUCUCACCUUCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK063039.1
ncRNA:23   AGUCAAACAAAAGGAGGUUAAGA   1
  **|*|||||||||||||||||**
targets:528   GAAUUUUGUUUUCCUCCAAUUAG   550

2.5 Oryza sativa Japonica Group cDNA clone:001-110-D03, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).