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BaseInfo

ncRNA ID novel_zma_miR2557
Species Zea mays
Class miRNA
Genome position Chr2:8519210-8519271 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 1 - GGUGUACGCGGCUCGCUCUGCCAA - 24
Stem-loop(if miRNA) --       -    C  G    G      UC  U
  GGUGUAC GCGG UC CUCU CCAAGG  GA U
  ||||||| |||| || |||| ||||||  ||
  UUACAUG CGUC AG GAGG GGUUCC  CU U
AU       G    -  -    -      --  G
Stem-loop sequence GGUGUACGCGGCUCGCUCUGCCAAGGUCGAUUUGUCCCUUGGGGAGGACUGCGGUACAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ073878.1
ncRNA:24   AACCGUCUCGCUCGGCGCAUGUGG   1
  |||||||||||||||||*||||||
targets:56   UUGGCAGAGCGAGCCGCAUACACC   79

1.5 TSA: Zea mays contig09515, mRNA sequence NA coding protein psRNATarget
EU940916.1
ncRNA:24   AACCGUCUCGCUCGGCGCAUGUGG   1
  |||||||||||||||||*||||||
targets:1222   UUGGCAGAGCGAGCCGCAUACACC   1245

1.5 Zea mays clone 1212834 mRNA sequence NA coding protein psRNATarget
EU940954.1
ncRNA:24   AACCGUCUCGCUCGGCGCAUGUGG   1
  |||||||||||||||||*||||||
targets:2166   UUGGCAGAGCGAGCCGCAUACACC   2189

1.5 Zea mays clone 1220838 mRNA sequence NA coding protein psRNATarget