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BaseInfo

ncRNA ID novel_zma_miR2549
Species Zea mays
Class miRNA
Genome position Chr10:130948440-130948645 [+]
Reference genome RefGen_v4
Source SRR2089713;SRR5451004
Length 24
Mature sequence(if miRNA) 183 - UUCUCUGUAGAUAUUAUGAGGCAU - 206
Stem-loop(if miRNA) --  UC             -   C    GAAA      UGGGAAA     GAAA   AGAU  C      G          C   GG         GGU     GAA    
  GU  UGUAAUGUCUGCA AGA GGGU    CGCUCU       GGUGA    AGC    AC GAACUU UCAAGUGAUU AGG  CACCUACAG   UGUCU   GUCCG
  ||  ||||||||||||| ||| ||||    ||||||       |||||    |||    || |||||| |||||||||| |||  |||||||||   |||||   ||||U
  CG  GUAUUAUAGAUGU UCU CCCG    GCGAGG       CUAUU    UCG    UG CUUGGA GGUUCAUUAA UCC  GUGGAUGUC   ACAGG   CAGGU
UA  GA             C   U    --AA      -------     ---G   ACAC  C      G          -   GG         --A     -AA    
Stem-loop sequence GUUCUGUAAUGUCUGCAAGACGGGUGAAACGCUCUUGGGAAAGGUGAGAAAAGCAGAUACCGAACUUGUCAAGUGAUUCAGGGGCACCUACAGGGUUGUCUGAAGUCCGUUGGACAAGGACAACUGUAGGUGGGCCUAAUUACUUGGGAGGUUCCGUCACAGCUGUUAUCGGAGCGAAGCCCUUCUCUGUAGAUAUUAUGAGGCAU