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BaseInfo

ncRNA ID	novel_zma_miR2547
Species	Zea mays
Class	miRNA
Genome position	Chr5:147310144-147310194 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385
Length	24
Mature sequence(if miRNA)	28 - AGCUCGGUGCCAUAGCCUAUGGCG - 51
Stem-loop(if miRNA)	--                    G A   CCAUAGGCUAUGGCGCCGAG U A   |||||||||||||||||||| | U   GGUAUCCGAUACCGUGGCUC A A GC                    G C
Stem-loop sequence	CCAUAGGCUAUGGCGCCGAGGUAAUACAGCUCGGUGCCAUAGCCUAUGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137355.1	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||||||||||=||||||| targets:651   CGCCAUAGGCUAUGGCGCCGAGCU   674 Target Full Sequence	1.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||||||||||=||||||| targets:651   CGCCAUAGGCUAUGGCGCCGAGCU   674 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||*|||||||=||||||| targets:1311   CGCCAUAGCCUAUGGCGCCGAGCU   1334 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||*|||||||=||||||| targets:1309   CGCCAUAGCCUAUGGCGCCGAGCU   1332 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||*|||||||=||||||| targets:1368   CGCCAUAGCCUAUGGCGCCGAGCU   1391 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   GCGGUAUCCGAUACCGUGGCUCGA   1   ||||||||*|||||||=||||||| targets:1368   CGCCAUAGCCUAUGGCGCCGAGCU   1391 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget