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BaseInfo

ncRNA ID	novel_zma_miR2546
Species	Zea mays
Class	miRNA
Genome position	Chr2:50786203-50786263 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR5451005;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	38 - ACCGGACUGUCUGGCGUGCCACCG - 61
Stem-loop(if miRNA)	--       --       -C    C          ACCGGAC  UGUCUGG  GUGC ACCGGACA   |||||||  |||||||  |||| |||||||G   UGGCCUG  ACAGGCC  CACG UGGCUUGU CG       UG       AC    -
Stem-loop sequence	ACCGGACUGUCUGGCGUGCCACCGGACAGUGUUCGGUGCACCACCGGACAGUGUCCGGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106959.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |||||||||*||=||||||||||| targets:94   CGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |||||||||*||=||||||||||| targets:797   CGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   ||*||||||*||=||||||||||| targets:695   CGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   *||||||=|*|||||||||||||| targets:483   GGGUGGCGCACCAGACAGUCCGGU   506 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:24   GC-CACCGUGCGGUCUGUCAGGCCA   1   ||-|||||=|*|||||||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.0	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget
HI410005.1	ncRNA:24   GC-CACCGUGCGGUCUGUCAGGCCA   1   ||-|||||=|*|||||||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.0	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:24   GC-CACCGUGCGGUCUGUCAGGCCA   1   ||-|||||=|*|||||||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGGU   26 Target Full Sequence	2.0	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   ||*||||||*||=||||||||||| targets:722   CGUUGGCACACCGGACAGUCCGGU   745 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |*|**||||*||=||||||||||| targets:741   CCGGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |*|||||||*||=||||||||||| targets:1379   CCGUGGCACACCGGACAGUCCGGU   1402 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |*|**||||*||=||||||||||| targets:1398   CCGGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |**||||||*||=||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |**||||||*||=||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   GCCACCGUGCGGUCUGUCAGGCCA   1   |**||||||*||=||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget