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BaseInfo

ncRNA ID novel_zma_miR2545
Species Zea mays
Class miRNA
Genome position Chr2:85735554-85735669 [-]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 1 - AGGGGGCAGGGGUGCACGCUGCGC - 24
Stem-loop(if miRNA) --    G -   G    G      G A    GGUC     C  C    A G   G  G   U
  GUAG G GCG CUCC GUCUCC G CGCC    GCGCG AC GCGC G GAC GC GUC C
  |||| | ||| |||| |||||| | ||||    ||||| || |||| | ||| || |||
  CGUC C CGU GGGG CGGGGG C GUGG    CGUGC UG CGUG C CUG CG CAG C
CG    G A   -    A      A -    ---A     -  A    - G   G  G   G
Stem-loop sequence GUAGGGGCGGCUCCGGUCUCCGGACGCCGGUCGCGCGCACCGCGCAGGGACGGCGGUCUCCGGACGGCGGUCGCGUGCAGUCGUGCAGGUGCAGGGGGCAGGGGUGCACGCUGCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU941187.1
ncRNA:24   CGCGUCGCACGUGGGGACGGGGGA   1
  |=||**=||*||||||||||||||
targets:143   GUGCCUUGUCCACCCCUGCCCCCU   166

3.0 Zea mays clone 1376489 mRNA sequence NA coding protein psRNATarget