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BaseInfo

ncRNA ID	novel_zma_miR2540
Species	Zea mays
Class	miRNA
Genome position	Chr10:129688296-129688377 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287162;SRR2287164;SRR2089702;SRR2089703;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - GGAUCACAGGAGGAUUGGAGG - 21
Stem-loop(if miRNA)	--     A A                             AA   GGAUC C GGAGGAUUGGAGGGGAUUGAGGGGGAAAU  A   ||||| | |||||||||||||||||||||||||||||   CCUAG G CCUCCUAACCUCCCCUAACUCCCCCUUUA  C GC     G C                             AU
Stem-loop sequence	GGAUCACAGGAGGAUUGGAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ082583.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |=|=||||||||||||||||| targets:2   CUUUCAAUCCUCCUGUGAUCC   22 Target Full Sequence	1.0	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||||||||||*||||||| targets:45   CCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||||||||||*||||||| targets:45   CCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||||||||||*||||||| targets:45   CCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
EU964952.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||||||||||*||||||| targets:24   CCUCCAAUCCUCCAGUGAUCC   44 Target Full Sequence	1.5	Zea mays clone 282757 proteasome subunit alpha type 7 mRNA, complete cds	NA	coding protein	psRNATarget
HI403018.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||=|||||||||*||||| targets:67   CCUCCGAUCCUCCUGGGAUCC   87 Target Full Sequence	2.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||=|||||||||*||||| targets:67   CCUCCGAUCCUCCUGGGAUCC   87 Target Full Sequence	2.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
JB163479.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   |||||=|||||||||*||||| targets:67   CCUCCGAUCCUCCUGGGAUCC   87 Target Full Sequence	2.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
HI406392.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:63   UCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
JB166853.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:63   UCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:63   UCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:562   UCUCCGAUCCUCCCGUGAUCC   582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:590   UCUCCGAUCCUCCCGUGAUCC   610 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:21   GGAGGUUAGGAGGACACUAGG   1   =||||=|||||||*||||||| targets:592   UCUCCGAUCCUCCCGUGAUCC   612 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget