Search result

BaseInfo

ncRNA ID	novel_zma_miR2538
Species	Zea mays
Class	miRNA
Genome position	Chr10:115288851-115288981 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR5451004
Length	24
Mature sequence(if miRNA)	108 - AGGGCUUGUUCGGUUAGAGGUGGA - 131
Stem-loop(if miRNA)	--   G           AG   U  -    --   A  A    A               -     A  A   AGG CUUGUUCGGUU  AGG GG AUUG  AGG GA UUGA GGGGAUUAAAUUCCU CCUAU CA U   ||| |||||||||||  ||| || ||||  ||| || |||| ||||||||||||||| ||||| ||   UCC GGAUAAGCUAA  UCC CC UAAC  UCC CU AACU CUCCUAAUUUAGGGA GGAUA GU U AA   G           AA   -  A    CA   -  -    A               A     A  U
Stem-loop sequence	AGGGCUUGUUCGGUUAGAGGUGGAUUGAGGAGAAUUGAAGGGGAUUAAAUUCCUCCUAUACAAUUUUGAAUAGGAAGGGAUUUAAUCCUCAUCAAUCCCUACCAAUACCCCUAAAAUCGAAUAGGGCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054119.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||=|||||||||||||||||| targets:463   UCCACUUCUAACCGAACAAGCCCU   486 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
HI406581.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:43   UCCACCUCUAACCGAACAAGCCGA   66 Target Full Sequence	2.5	Sequence 4706 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238711.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:43   UCCACCUCUAACCGAACAAGCCGA   66 Target Full Sequence	2.5	Sequence 4706 from Patent EP2985353	NA	coding protein	psRNATarget
JB167042.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:43   UCCACCUCUAACCGAACAAGCCGA   66 Target Full Sequence	2.5	Sequence 4706 from Patent EP2559767	NA	coding protein	psRNATarget
EU951737.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:241   UCCACCUCUAACCGAACAAGCCGA   264 Target Full Sequence	2.5	Zea mays clone 996050 mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||*||||||||||||||||| targets:3293   UCCACCCCUAACCGAACAAGCCCU   3316 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT063043.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:1556   UCCACCUCUAACCGAACAAGCCGA   1579 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019B03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647558.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:3293   UCCACCUCUAACCGAACAAGCCGA   3316 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103627269), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647557.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||||||||||||||||** targets:3338   UCCACCUCUAACCGAACAAGCCGA   3361 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103627269), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||=|*||||||||||||||||| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	1.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||=|*||||||||||||||||| targets:3606   UCCAUCCCUAACCGAACAAGCCCU   3629 Target Full Sequence	1.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||==*||||||||||||||||| targets:1043   UCCAUUACUAACCGAACAAGCCCU   1066 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:143   UCCACACCUAACCGAACAAGCCCU   166 Target Full Sequence	2.0	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:213   UCCACACCUAACCGAACAAGCCCU   236 Target Full Sequence	2.0	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:203   UCCACACCUAACCGAACAAGCCCU   226 Target Full Sequence	2.0	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:428   UCCACGCCUAACCGAACAAGCCCU   451 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||||**||||||||||||||||| targets:788   UCCACGCCUAACCGAACAAGCCCU   811 Target Full Sequence	2.0	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:3061   UCCACCCCUAACCGAACAAGGCCU   3084 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||*|||||||||||||*||| targets:3066   UCCACCCCUAACCGAACAAGGCCU   3089 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||*|||||||||||*||| targets:1614   UCCACCUCAAACCGAACAAGACCU   1637 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||||||*|||||||||||*||| targets:1614   UCCACCUCAAACCGAACAAGACCU   1637 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||*|=|*|||||||||||||||| targets:1634   UCCCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT055781.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||*|=|*|||||||||||||||| targets:1634   UCCCCUUGUAACCGAACAAGCCCU   1657 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
BT061569.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   |||*|=|*|||||||||||||||| targets:1823   UCCCCUUGUAACCGAACAAGCCCU   1846 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||||=|||*|||||||||*||||| targets:3167   UCCAUCUCAAACCGAACAUGCCCU   3190 Target Full Sequence	2.5	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU944719.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   ||=|=|||*|||||||*||||||| targets:932   UCUAUCUCGAACCGAAGAAGCCCU   955 Target Full Sequence	2.5	Zea mays clone 227778 mRNA sequence	NA	coding protein	psRNATarget
EU968162.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   *||*|=||*||||||||||||||| targets:250   ACCCCUUCAAACCGAACAAGCCCU   273 Target Full Sequence	2.0	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   AGGUGGAGAUUGGCUUGUUCGGGA   1   *||*|=||*||||||||||||||| targets:211   ACCCCUUCAAACCGAACAAGCCCU   234 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget