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BaseInfo

ncRNA ID novel_zma_miR2532
Species Zea mays
Class miRNA
Genome position Chr10:116467127-116467183 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 34 - AUAUAAUGUAACUUAUUUUGAACU - 57
Stem-loop(if miRNA) --                         A
  AUAUAAUGUAACUUAUUUUGAACUA A
  ||||||||||||||||||||||||| A
  UAUAUUAUAUUGAAUAAAACUUGAU U
AA                         U
Stem-loop sequence AUAUAAUGUAACUUAUUUUGAACUAAAAUUUAGUUCAAAAUAAGUUAUAUUAUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU958667.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||=|||||||
targets:500   AGUUCAAAAUAAGUUAUAUUAUAU   523

1.5 Zea mays clone 1708924 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008661345.2
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:3313   AGUUCAAAAUAAGUUAGAUUAUAU   3336

1.5 PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA NA coding protein psRNATarget
EU971425.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:526   AGUUCAAAAUAAGUUAGAUUAUAU   549

1.5 Zea mays clone 364446 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU945179.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:902   AGUUCAAAAUAAGUUAGAUUAUAU   925

1.5 Zea mays clone 243633 mRNA sequence NA coding protein psRNATarget
AY104747.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:955   AGUUCAAAAUAAGUUAGAUUAUAU   978

1.5 Zea mays PCO066213 mRNA sequence NA coding protein psRNATarget
EZ065605.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:322   AGUUCAAAAUAAGUUAGAUUAUAU   345

1.5 TSA: Zea mays contig01238, mRNA sequence NA coding protein psRNATarget
LQ238906.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4901 from Patent EP2985353 NA coding protein psRNATarget
HI406797.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4922 from Patent EP2074227 NA coding protein psRNATarget
JB167237.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4901 from Patent EP2559767 NA coding protein psRNATarget
HI406776.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4901 from Patent EP2074227 NA coding protein psRNATarget
JB167258.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4922 from Patent EP2559767 NA coding protein psRNATarget
LQ238927.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||||||||||||||*|||||||
targets:53   AGUUCAAAAUAAGUUAGAUUAUAU   76

1.5 Sequence 4922 from Patent EP2985353 NA coding protein psRNATarget
EU956611.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  |*||||||||||||||=|||||||
targets:1609   AAUUCAAAAUAAGUUAUAUUAUAU   1632

1.5 Zea mays clone 1568093 mRNA sequence NA coding protein psRNATarget
XM_008669523.2
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ||||=|||||||||||*|||||||
targets:2093   AGUUUAAAAUAAGUUAGAUUAUAU   2116

1.5 PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA NA coding protein psRNATarget
BT084023.2
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  *|||||||||||||||*|||||||
targets:483   UGUUCAAAAUAAGUUAGAUUAUAU   506

1.5 Zea mays full-length cDNA clone ZM_BFb0066F23 mRNA, complete cds NA coding protein psRNATarget
BT055069.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  |*||||||||||||||*|||||||
targets:590   AAUUCAAAAUAAGUUAGAUUAUAU   613

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU952064.1
ncRNA:24   UCAAGUUUUAUUCAAUGUAAUAUA   1
  ***||||||*|||||=||||||||
targets:470   UUGUCAAAAAAAGUUGCAUUAUAU   493

2.5 Zea mays clone 1154957 mRNA sequence NA coding protein psRNATarget
BT053896.1
ncRNA:24   UCA--AGUUUUAUUCAAUGUAAUAUA   1
  *||--|=|*|||||||||*|||||||
targets:1623   UGUGAUUACAAUAAGUUAGAUUAUAU   1648

2.5 Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds NA coding protein psRNATarget
NM_001152270.1
ncRNA:24   UCA--AGUUUUAUUCAAUGUAAUAUA   1
  *||--|=|*|||||||||*|||||||
targets:1623   UGUGAUUACAAUAAGUUAGAUUAUAU   1648

2.5 Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA NA coding protein psRNATarget
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