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BaseInfo

ncRNA ID ath-miRf10033-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - CUAGUCGACCUCGGGGUCGAGUG - NA
Stem-loop(if miRNA) GGU    A         A         G   UUUGAUC    GAUGG     UGA G    U  GGA           GU          -U     G A
   GAAG CACUCGACC CGGGGUCGA UGG       GAGU     UCAGG   U GAGA GA   CACUCGACCUC  GGUCGAGUGG  GAGGU A G
   |||| ||||||||| ||||||||| |||       ||||     |||||   | |||| ||   |||||||||||  ||||||||||  ||||| | U
   UUUC GUGAGCUGG GCUCCAGCU AUC       CUCG     AGUUC   A UUCU CU   GUGAGCUGGGG  CCAGCUCAUC  CUUUA U G
CAG    -         G         G   -------    ----A     UAG G    -  --G           GU          UU     G G
Stem-loop sequence GGUGAAGACACUCGACCACGGGGUCGAGUGGUUUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAGGACACUCGACCUCGUGGUCGAGUGGUGAGGUGAAGUGGUGAUUUCUUCUACUCGACCUGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUAGUCGACCUCGGGGUCGAGUGCUUUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_103391.1
ncRNA:23   GUGAGCUGGGGCUCCAGCUGAUC   1
  |||||||||||||||||||||||
targets:1060   CACUCGACCCCGAGGUCGACUAG   1082

0.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183042.1
ncRNA:23   GUGAGCUGGGGCUCCAGCUGAUC   1
  |||||||||*|||||||||*|||
targets:1527   CACUCGACCACGAGGUCGAGUAG   1549

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget