ncRNA ID | ath-miRf10033-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 23 |
Mature sequence(if miRNA) | NA - CUAGUCGACCUCGGGGUCGAGUG - NA |
Stem-loop(if miRNA) |
GGU    A         A         G   UUUGAUC    GAUGG     UGA G    U  GGA           GU          -U     G A    GAAG CACUCGACC CGGGGUCGA UGG       GAGU     UCAGG   U GAGA GA   CACUCGACCUC  GGUCGAGUGG  GAGGU A G    |||| ||||||||| ||||||||| |||       ||||     |||||   | |||| ||   |||||||||||  ||||||||||  ||||| | U    UUUC GUGAGCUGG GCUCCAGCU AUC       CUCG     AGUUC   A UUCU CU   GUGAGCUGGGG  CCAGCUCAUC  CUUUA U G CAG    -         G         G   -------    ----A     UAG G    -  --G           GU          UU     G G |
Stem-loop sequence | GGUGAAGACACUCGACCACGGGGUCGAGUGGUUUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAGGACACUCGACCUCGUGGUCGAGUGGUGAGGUGAAGUGGUGAUUUCUUCUACUCGACCUGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUAGUCGACCUCGGGGUCGAGUGCUUUGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_103391.1 |
|
0.0 | Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA | DNAse I-like superfamily protein(AT1G40390) | coding protein | psRNATarget | |||||||||
EF183042.1 |
|
2.5 | Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence | NA | coding protein | psRNATarget |