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BaseInfo

ncRNA ID novel_zma_miR2527
Species Zea mays
Class miRNA
Genome position Chr1:108487322-108487442 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 21
Mature sequence(if miRNA) 1 - UUUUGAGAAAGUUGUGAGGCA - 21
Stem-loop(if miRNA) --          G      G   G A          C     C         -     - U
  UUUUGAGAAA UUGUGA GCA U UGUGUAGAAA CUAAG GAUCUACAU UGAAA C C
  |||||||||| |||||| ||| | |||||||||| ||||| ||||||||| ||||| | U
  AAAGCUCUUU AACACU UGU A ACACAUCUUU GAUUC CUAGGUGUG ACUUU G A
UC          A      G   G C          U     U         U     A U
Stem-loop sequence UUUUGAGAAAGUUGUGAGGCAGUAUGUGUAGAAACCUAAGCGAUCUACAUUGAAACUCUAUGAUUUCAUGUGUGGAUCUCUUAGUUUUCUACACACAGUGUGUCACAAAUUUCUCGAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163683.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235352.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
HI403222.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget