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BaseInfo

ncRNA ID	novel_zma_miR2525
Species	Zea mays
Class	miRNA
Genome position	Chr1:78297625-78297700 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AGGGGAUUAGAGGGGCUAAAAUCC - 24
Stem-loop(if miRNA)	--        A AG                      GA   AGGGGAUU G  GGGCUAAAAUCCAUUUCUUAUU  A   |||||||| |  ||||||||||||||||||||||  A   UUCCCUAA C  CCCGAUUUUAGGUGGAGAAUAA  U CC        - CU                      GU
Stem-loop sequence	AGGGGAUUAGAGGGGCUAAAAUCCAUUUCUUAUUGAAAUUGAAUAAGAGGUGGAUUUUAGCCCUCCAAUCCCUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166281.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   |||||||||||||||||||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	0.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   |||||||||||||||||||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	0.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   |||||||||||||||||||||||| targets:196   GGAUUUUAGCCCCUCUAAUCCCCU   219 Target Full Sequence	0.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   |||||||||||||||*|||||||| targets:3494   GGAUUUUAGCCCCUCCAAUCCCCU   3517 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   |||||||||||||||*|||||||| targets:3529   GGAUUUUAGCCCCUCCAAUCCCCU   3552 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY111680.1	ncRNA:24   CCU-AAAAUCGGGGAGAUUAGGGGA   1   |||-||||||=|||||||||||=|| targets:80   GGAAUUUUAGUCCCUCUAAUCCUCU   104 Target Full Sequence	2.5	Zea mays CL11621_2 mRNA sequence	NA	coding protein	psRNATarget
AY106606.2	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   ||||||*|*=|||||||||||||| targets:496   GGAUUUAAUUCCCUCUAAUCCCCU   519 Target Full Sequence	3.0	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   ||||||*|*=|||||||||||||| targets:776   GGAUUUAAUUCCCUCUAAUCCCCU   799 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   *|||||||*||||||*|||||||| targets:678   UGAUUUUAUCCCCUCCAAUCCCCU   701 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   *|||||||*||||||*|||||||| targets:1558   UGAUUUUAUCCCCUCCAAUCCCCU   1581 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   *|||||||*||||||*|||||||| targets:1578   UGAUUUUAUCCCCUCCAAUCCCCU   1601 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   *|||||||*||||||*|||||||| targets:1602   UGAUUUUAUCCCCUCCAAUCCCCU   1625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   CCUAAAAUCGGGGAGAUUAGGGGA   1   *|||||||*||||||*|||||||| targets:1635   UGAUUUUAUCCCCUCCAAUCCCCU   1658 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget