Search result

BaseInfo

ncRNA ID	novel_zma_miR2520
Species	Zea mays
Class	miRNA
Genome position	Chr1:4143343-4143422 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287159;SRR2287161;SRR1618882;SRR2287163;SRR4237221;SRR4237223;SRR2089701;SRR2089705
Length	21
Mature sequence(if miRNA)	60 - AGCAAGAGGAUUGGAGGGGCU - 80
Stem-loop(if miRNA)	--      A                              U   AGCAAG GGAUUGGAGGGGCUAAAAUCACCUUGCUAU C   |||||| ||||||||||||||||||||||||||||||   UCGUUU CCUAACCUCCCCGAUUUUAGUGGAACGAUA A CC      C                              A
Stem-loop sequence	AGCAAGAGGAUUGGAGGGGCUAAAAUCACCUUGCUAUUCAAAUAGCAAGGUGAUUUUAGCCCCUCCAAUCCCUUUGCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974541.1	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1480   AGCCCCUUCAAUCCCCUUGCU   1500 Target Full Sequence	2.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1579   AGCCCCUUCAAUCCCCUUGCU   1599 Target Full Sequence	2.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1526   AGCCCCUUCAAUCCCCUUGCU   1546 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1619   AGCCCCUUCAAUCCCCUUGCU   1639 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1652   AGCCCCUUCAAUCCCCUUGCU   1672 Target Full Sequence	2.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1672   AGCCCCUUCAAUCCCCUUGCU   1692 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1718   AGCCCCUUCAAUCCCCUUGCU   1738 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   UCGGGGAGGUUAGGAGAACGA   1   |||||||=||||||*|||||| targets:1840   AGCCCCUUCAAUCCCCUUGCU   1860 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget