| ncRNA ID | osa-miR820b |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr7:13120534-13120734 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 172 - UCGGCCUCGUGGAUGGACCAG - 192 |
| Stem-loop(if miRNA) |
GUACA G AG - G C U CAU CG -A U A UGCGUCG CCUCGUGGAUGGACC GAGC UCGAC UUCCUUAAGGC GUUC UUCCGACC ACAAGGUUCCGU CCUGC UUGU CCAAG G ||||||| ||||||||||||||| |||| ||||| ||||||||||| |||| |||||||| |||||||||||| ||||| |||| ||||| U ACGCAGC GGAGCACCUGCCUGG UUCG AGCUG AAGGAAUUCCG CAAG AAGGCUGG UGUUCCAAGGUG GGACG AGCA GGUUC G GAUCG A AU U - U C AAU AA AA - U |
| Stem-loop sequence | GUACAUGCGUCGGCCUCGUGGAUGGACCAGGAGCUCGACGUUCCUUAAGGCCGUUCUUUCCGACCCAUACAAGGUUCCGUCGCCUGCAUUGUUCCAAGAGUGUCUUGGACGAAAGCAGGAAGUGGAACCUUGUUAAGGUCGGAACGAACUGCCUUAAGGAAGUCGAUGCUUUAGGUCCGUCCACGAGGACGACGCAGCUAG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015782959.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X1, mRNA | L-ascorbate oxidase homolog(LOC4339141) | coding protein | psRNATarget | |||||||||
| XM_015782960.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X2, mRNA | L-ascorbate oxidase homolog(LOC4339141) | coding protein | psRNATarget | |||||||||
| XM_015782961.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X3, mRNA | L-ascorbate oxidase homolog(LOC4339141) | coding protein | psRNATarget | |||||||||
| AK105493.1 |
|
2.0 | Oryza sativa Japonica Group cDNA clone:001-127-C03, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015766171.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 2 (LOC4325516), mRNA | NAC domain-containing protein 2(LOC4325516) | coding protein | psRNATarget | |||||||||
| JN185443.1 |
|
2.0 | Oryza sativa Japonica Group NAC transcription factor 14 (NAC14) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| XM_015785281.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group M protein, serotype 5 (LOC4339509), mRNA | M protein, serotype 5(LOC4339509) | coding protein | psRNATarget | |||||||||
| AK060333.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:001-008-B08, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK100682.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J023113L22, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"; Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH; FEBS Lett. 580:5111-5116(2006). |
| 2 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
| 3 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |