Search result

BaseInfo

ncRNA ID	novel_zma_miR2518
Species	Zea mays
Class	miRNA
Genome position	Chr1:17092782-17092868 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089707
Length	22
Mature sequence(if miRNA)	1 - UUUGACCAAGCUGAUCACCCCG - 22
Stem-loop(if miRNA)	--   A    U   C   -        -C   -------     C  A   GGG GGUC GCU GGU GAAGGUGG  GGC       GCCAG CU C   ||| |||| ||| ||| ||||||||  |||       ||||| ||   CCC CUAG CGA CCA UUUCCACU  CCG       UGGUC GA C GC   A    U   A   G        AC   AACAGCC     A  U
Stem-loop sequence	GGGAGGUCUGCUCGGUGAAGGUGGCGGCGCCAGCCUACCUAGACUGGUCCGACAAGCCCAUCACCUUUGACCAAGCUGAUCACCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ103642.1	ncRNA:22   GCCCCACUAGUCGAACCAGUUU   1   |*|||||*||||||||||||*| targets:32   CUGGGUGUUCAGCUUGGUCAUA   53 Target Full Sequence	2.5	TSA: Zea mays contig39299, mRNA sequence	NA	coding protein	psRNATarget
XM_008664734.2	ncRNA:22   GCCCCACUAGUCGAACCAGUUU   1   *|*|||||*=|||||||||||| targets:3751   AGUGGUGACUAGCUUGGUCAAA   3772 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103641379 (LOC103641379), mRNA	NA	coding protein	psRNATarget
NM_001137719.1	ncRNA:22   GCCCCACUAGUCGAACCAGUUU   1   |*|||||*||||||||||||*| targets:455   CUGGGUGUUCAGCUUGGUCAUA   476 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192499 (LOC100192499), mRNA	NA	coding protein	psRNATarget
BT034494.1	ncRNA:22   GCCCCACUAGUCGAACCAGUUU   1   |*|||||*||||||||||||*| targets:455   CUGGGUGUUCAGCUUGGUCAUA   476 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0173M10 mRNA, complete cds	NA	coding protein	psRNATarget
BT065101.1	ncRNA:22   GCCCCACUAGUCGAACCAGUUU   1   |*|||||*||||||||||||*| targets:459   CUGGGUGUUCAGCUUGGUCAUA   480 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059J08 mRNA, complete cds	NA	coding protein	psRNATarget