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BaseInfo

ncRNA ID novel_zma_miR2511
Species Zea mays
Class miRNA
Genome position Chr1:77129109-77129195 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 64 - UCGGGUGACGGAUAUGGAUAGCAG - 87
Stem-loop(if miRNA) --U      A            GCAG    CCA  C     AAAU
   CGGGUG CGGAUAUGGAUA    AUAU   UA CCACG    U
   |||||| ||||||||||||    ||||   || |||||    A
   GCCCAU GCCUAUACCUAU    UAUG   AU GGUGC    U
GGC      -            --GA    -CC  A     CCAU
Stem-loop sequence UCGGGUGACGGAUAUGGAUAGCAGAUAUCCAUACCCACGAAAUUAUUACCCGUGGAUACCGUAUAGUAUCCAUAUCCGUACCCGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545810.1
ncRNA:24   GACGAUAGGUAUAGGCAGUGGGCU   1
  *|||||||||||||||||||||**
targets:898   AUGCUAUCCAUAUCCGUCACCCAU   921

2.5 PREDICTED: Zea mays zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC109943047), mRNA NA coding protein psRNATarget
XM_020541316.1
ncRNA:24   GACGAUAGGUAUAGGCAGUGGGCU   1
  ||*||||||||||||*||||||||
targets:1037   CUACUAUCCAUAUCCAUCACCCGA   1060

1.5 PREDICTED: Zea mays ribonuclease P (LOC100285816), mRNA NA coding protein psRNATarget