Search result

BaseInfo

ncRNA ID novel_zma_miR2510
Species Zea mays
Class miRNA
Genome position Chr10:127743123-127743292 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - CCUAGUUAUGGAUUGGUUUGGGGU - 24
Stem-loop(if miRNA) --          A                                AU  GUUCAGCAUACACAACGACAAAUUUAUAGGUAGCUU
  CCCAAACUAA UCCAUAACUGGGUGGAAACCCAUAGAAAAUCC  GG                                    C
  |||||||||| ||||||||||||||||||||||||||||||||  ||                                    A
  GGGUUUGGUU AGGUAUUGAUCCACCUUUGGGUAUCUUUUGGG  AC                                    A
UG          -                                CG  CAAGUAUAAUAAUUCCGUCGUCGUAUGUGCCACUGU
Stem-loop sequence CCCAAACUAAAUCCAUAACUGGGUGGAAACCCAUAGAAAAUCCAUGGGUUCAGCAUACACAACGACAAAUUUAUAGGUAGCUUCAAUGUCACCGUGUAUGCUGCUGCCUUAAUAAUAUGAACCAGCGGGUUUUCUAUGGGUUUCCACCUAGUUAUGGAUUGGUUUGGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675165.2
ncRNA:24   UGGGGUUUGGUUAGGUAUUGAUCC   1
  |||||||||||||||||||||=||
targets:911   ACCCCAAACCAAUCCAUAACUGGG   934

1.5 PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA NA coding protein psRNATarget