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BaseInfo

ncRNA ID	novel_zma_miR2509
Species	Zea mays
Class	miRNA
Genome position	Chr1:86056363-86056415 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089699
Length	24
Mature sequence(if miRNA)	1 - GAGGGACGAGAGGGGACGCCAGGG - 24
Stem-loop(if miRNA)	--G  U       AG         AA    UG UGUCCCU  UUGUCCCUC  A    || |||||||  |||||||||  A    AC GCAGGGG  AGCAGGGAG  U GGG  C       AG         GU
Stem-loop sequence	GUGUUGUCCCUAGUUGUCCCUCAAAAUUGGAGGGACGAGAGGGGACGCCAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406205.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   |=|||*|||||=|||||||||||| targets:49   CUCUGUCGUCCUCUCUCGUCCCUC   72 Target Full Sequence	2.5	Sequence 4330 from Patent EP2074227	NA	coding protein	psRNATarget
JB166666.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   |=|||*|||||=|||||||||||| targets:49   CUCUGUCGUCCUCUCUCGUCCCUC   72 Target Full Sequence	2.5	Sequence 4330 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238335.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   |=|||*|||||=|||||||||||| targets:49   CUCUGUCGUCCUCUCUCGUCCCUC   72 Target Full Sequence	2.5	Sequence 4330 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008675994.2	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   |=|||*|*|||||||||||||||| targets:114   CUCUGCCCUCCCCUCUCGUCCCUC   137 Target Full Sequence	2.0	PREDICTED: Zea mays U-box domain-containing protein 43 (LOC103650422), mRNA	NA	coding protein	psRNATarget
BT084928.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   **|**||||||||||||||||=|| targets:48   AGCGCGCGUCCCCUCUCGUCCUUC   71 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0208H03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001324163.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   **|**||||||||||||||||=|| targets:48   AGCGCGCGUCCCCUCUCGUCCUUC   71 Target Full Sequence	1.5	Zea mays inverted formin-2-like (LOC103626037), mRNA	NA	coding protein	psRNATarget
XM_020537545.1	ncRNA:24   GGGACCGCAGGGGAGAGCAGGGAG   1   **|**||||||||||||||||=|| targets:42   AGCGCGCGUCCCCUCUCGUCCUUC   65 Target Full Sequence	1.5	PREDICTED: Zea mays inverted formin-2-like (LOC103626037), transcript variant X1, mRNA	NA	coding protein	psRNATarget