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BaseInfo

ncRNA ID novel_zma_miR2508
Species Zea mays
Class miRNA
Genome position Chr5:101153543-101153614 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 49 - CAAUCCCCUCUAAUCCUACCGGGA - 72
Stem-loop(if miRNA) --    G     C A                   UA
  CCGG AGGAU G AGGGGAUUGAGGGGGAAAU  G
  |||| ||||| | |||||||||||||||||||
  GGCC UCCUA U UCCCCUAACUCCCCCUUUA  U
AG    A     A C                   CU
Stem-loop sequence CCGGGAGGAUCGAAGGGGAUUGAGGGGGAAAUUAGUUCAUUUCCCCCUCAAUCCCCUCUAAUCCUACCGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106816.1
ncRNA:24   AGGGCCAUCCUAAUCUCCCCUAAC   1
  |=||||*||||||=||||||||||
targets:254   UUCCGGGAGGAUUGGAGGGGAUUG   277

2.5 TSA: Zea mays contig42474, mRNA sequence NA coding protein psRNATarget
XM_008649581.2
ncRNA:24   AGGGCCAUCCUAAUCUCCCCUAAC   1
  ||*=*|*||||||=||||||||||
targets:1756   UCAUAGAAGGAUUGGAGGGGAUUG   1779

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget