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BaseInfo

ncRNA ID novel_zma_miR2503
Species Zea mays
Class miRNA
Genome position Chr5:16625657-16625735 [-]
Reference genome RefGen_v4
Source SRR1583941
Length 21
Mature sequence(if miRNA) 59 - AAUCCAUGUGUAUUGAGGUGG - 79
Stem-loop(if miRNA) --                         A       A   
  AAUCCAUGUGUAUUGAGGUGGAUUG GGUGUAA UUAG
  ||||||||||||||||||||||||| ||||||| |||U
  UUAGGUACACAUAACUCCACCUAAC CCACAUU AAUU
AG                         C       G   
Stem-loop sequence AAUCCAUGUGUAUUGAGGUGGAUUGAGGUGUAAAUUAGUUUAAGUUACACCCCAAUCCACCUCAAUACACAUGGAUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008677341.2
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  ||||||||||||||=||||||
targets:2968   CCACCUCAAUACACGUGGAUU   2988

1.5 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
XM_020550625.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  ||||||||||||||=||||||
targets:2952   CCACCUCAAUACACGUGGAUU   2972

1.5 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget
LQ235208.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||||||||||=|||||||||
targets:72   CCACCUCAAUAUACAUGGAUU   92

1.5 Sequence 1203 from Patent EP2985353 NA coding protein psRNATarget
HI403078.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||||||||||=|||||||||
targets:72   CCACCUCAAUAUACAUGGAUU   92

1.5 Sequence 1203 from Patent EP2074227 NA coding protein psRNATarget
JB163539.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||||||||||=|||||||||
targets:72   CCACCUCAAUAUACAUGGAUU   92

1.5 Sequence 1203 from Patent EP2559767 NA coding protein psRNATarget
XM_020540490.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1096   CUGCCUCAAUACACAUGGAUU   1116

1.0 PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540489.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1046   CUGCCUCAAUACACAUGGAUU   1066

1.0 PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001153718.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1015   CUGCCUCAAUACACAUGGAUU   1035

1.0 Zea mays RNA polymerase II Rpb4 core protein (umc1549a), mRNA NA coding protein psRNATarget
BT065432.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1015   CUGCCUCAAUACACAUGGAUU   1035

1.0 Zea mays full-length cDNA clone ZM_BFb0153M09 mRNA, complete cds NA coding protein psRNATarget
EU953864.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1005   CUGCCUCAAUACACAUGGAUU   1025

1.0 Zea mays clone 1447962 calcitonin peptide-receptor component protein mRNA, complete cds NA coding protein psRNATarget
EU959927.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:1030   CUGCCUCAAUACACAUGGAUU   1050

1.0 Zea mays clone 220699 calcitonin peptide-receptor component protein mRNA, complete cds NA coding protein psRNATarget
AY109209.2
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:992   CUGCCUCAAUACACAUGGAUU   1012

1.0 Zea mays PCO083694 mRNA sequence NA coding protein psRNATarget
XM_020548227.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:802   CUGCCUCAAUACACAUGGAUU   822

1.0 PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA NA coding protein psRNATarget
XM_020548228.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:751   CUGCCUCAAUACACAUGGAUU   771

1.0 PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA NA coding protein psRNATarget
XM_020548226.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:724   CUGCCUCAAUACACAUGGAUU   744

1.0 PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA NA coding protein psRNATarget
EZ089181.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |==||||||||||||||||||
targets:410   CUGCCUCAAUACACAUGGAUU   430

1.0 TSA: Zea mays contig24827, mRNA sequence NA coding protein psRNATarget
LQ235359.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||=|||||||||=|||||||
targets:72   CCAUCUCAAUACAUAUGGAUU   92

2.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
HI403229.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||=|||||||||=|||||||
targets:72   CCAUCUCAAUACAUAUGGAUU   92

2.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
JB163690.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |||=|||||||||=|||||||
targets:72   CCAUCUCAAUACAUAUGGAUU   92

2.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
XM_020546594.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  *|||||||||||||=||||||
targets:1714   ACACCUCAAUACACGUGGAUU   1734

1.5 PREDICTED: Zea mays uncharacterized LOC100502429 (LOC100502429), mRNA NA coding protein psRNATarget
EU961632.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  =||*|||||||||=|||||||
targets:1814   UCAGCUCAAUACAUAUGGAUU   1834

2.5 Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds NA coding protein psRNATarget
AY103802.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |*||=||||||||=|||||||
targets:794   CAACUUCAAUACAUAUGGAUU   814

2.5 Zea mays PCO148457 mRNA sequence NA coding protein psRNATarget
EZ052294.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  |*||=||||||||=|||||||
targets:67   CAACUUCAAUACAUAUGGAUU   87

2.5 TSA: Zea mays contig53415, mRNA sequence NA coding protein psRNATarget
NM_001322054.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  ==|=||||*||||||||||||
targets:1209   UUAUCUCAUUACACAUGGAUU   1229

2.5 Zea mays uncharacterized LOC107522024 (LOC107522024), mRNA NA coding protein psRNATarget
BT062975.1
ncRNA:21   GGUGGAGUUAUGUGUACCUAA   1
  ==|=||||*||||||||||||
targets:1209   UUAUCUCAUUACACAUGGAUU   1229

2.5 Zea mays full-length cDNA clone ZM_BFc0013H23 mRNA, complete cds NA coding protein psRNATarget
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