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BaseInfo

ncRNA ID	novel_zma_miR2502
Species	Zea mays
Class	miRNA
Genome position	Chr1:164020843-164020948 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	23
Mature sequence(if miRNA)	1 - UGUGGCAAGUUAGACAGCGAACC - 23
Stem-loop(if miRNA)	---UUUA  G      A         -- UGCCUAAGGUUAGUCGUUCGAAUUGA        UG CUAACU UGCCACACU  U                          A        || |||||| |||||||||  |        AC GAUUGA ACGGUGUGA  C                          G CCAAGCG  A      -         UA GGAUUGAAAAGACGGAUUCCAAUCAA
Stem-loop sequence	UUUAUGGCUAACUAUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAUAGUGUGGCAAGUUAGACAGCGAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057573.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||||||||||||=|||||||| targets:244   GGUUCGCUGUCUAAUUUGCCACA   266 Target Full Sequence	1.5	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
JB163853.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||||||| targets:12   GGUUCGCUGCCUAACUUGCCACA   34 Target Full Sequence	1.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||||||| targets:12   GGUUCGCUGCCUAACUUGCCACA   34 Target Full Sequence	1.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||||||| targets:12   GGUUCGCUGCCUAACUUGCCACA   34 Target Full Sequence	1.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||=|||| targets:12   GGUUCGCUGCCUAACUUGUCACA   34 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||=|||| targets:12   GGUUCGCUGCCUAACUUGUCACA   34 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*||||||||=|||| targets:12   GGUUCGCUGCCUAACUUGUCACA   34 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*=|||||||||||| targets:12   GGUUCGCUGCUUAACUUGCCACA   34 Target Full Sequence	2.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*=|||||||||||| targets:12   GGUUCGCUGCUUAACUUGCCACA   34 Target Full Sequence	2.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*=|||||||||||| targets:12   GGUUCGCUGCUUAACUUGCCACA   34 Target Full Sequence	2.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
BT083952.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*|||||||||||||||| targets:1477   GGUUUGGUGUCUAACUUGCCACA   1499 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*|||||||||||||||| targets:3001   GGUUUGAUGUCUAACUUGCCACA   3023 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*|||||||||||||||| targets:3129   GGUUUGAUGUCUAACUUGCCACA   3151 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*|||||||||||||||| targets:3136   GGUUUGAUGUCUAACUUGCCACA   3158 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU968686.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||*|||*||||||||||||| targets:616   GGUUCACUGCCUAACUUGCCACA   638 Target Full Sequence	2.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||*|||*||||||||||||| targets:599   GGUUCACUGCCUAACUUGCCACA   621 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||*|||*||||||||||||| targets:634   GGUUCACUGCCUAACUUGCCACA   656 Target Full Sequence	2.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
BT038009.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*|||||||*||||| targets:272   GGUUCGCUGCCUAACUUACCACA   294 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656231.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||||||*|||||||*||||| targets:5235   GGUUCGCUGCCUAACUUACCACA   5257 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*||*||||||||||||| targets:703   GGUUUGAUGGCUAACUUGCCACA   725 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*||*||||||||||||| targets:703   GGUUUGAUGGCUAACUUGCCACA   725 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*||*||||||||||||| targets:703   GGUUUGAUGGCUAACUUGCCACA   725 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   ||||=|*||*||||||||||||| targets:2668   GGUUUGAUGGCUAACUUGCCACA   2690 Target Full Sequence	3.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066780.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||-|||||*|||=||||||||| targets:2235   GGU-CGCUGCCUAGCUUGCCACA   2256 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0068J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545120.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||-|||||*|||=||||||||| targets:2260   GGU-CGCUGCCUAGCUUGCCACA   2281 Target Full Sequence	2.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||-|||||*|||=||||||||| targets:2400   GGU-CGCUGCCUAGCUUGCCACA   2421 Target Full Sequence	2.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001165741.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||-|||||*|||=||||||||| targets:2575   GGU-CGCUGCCUAGCUUGCCACA   2596 Target Full Sequence	2.5	Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), mRNA	NA	coding protein	psRNATarget
BT060733.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||-|||||*|||=||||||||| targets:2575   GGU-CGCUGCCUAGCUUGCCACA   2596 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0040K04 mRNA, complete cds	NA	coding protein	psRNATarget
BT018862.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |||||**||*||||||||||||| targets:1042   GGUUCAGUGCCUAACUUGCCACA   1064 Target Full Sequence	3.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
BT033837.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |*||=|*||*||||||||||||| targets:924   GAUUUGAUGCCUAACUUGCCACA   946 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |*||=|*||*||||||||||||| targets:1412   GAUUUGAUGCCUAACUUGCCACA   1434 Target Full Sequence	3.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:23   CCAAGCGACAGAUUGAACGGUGU   1   |*||=|*||*||||||||||||| targets:1422   GAUUUGAUGCCUAACUUGCCACA   1444 Target Full Sequence	3.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget