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BaseInfo

ncRNA ID	novel_zma_miR2500
Species	Zea mays
Class	miRNA
Genome position	Chr1:182818357-182818441 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR1618882;SRR5105959
Length	21
Mature sequence(if miRNA)	65 - ACCGGAGGGGAUUGGAGAGAU - 85
Stem-loop(if miRNA)	--                 A AU         ---        A   ACCGGAGGGGAUUGGAG G  UAAAAUCCC   CUUAUUUA A   ||||||||||||||||| |  |||||||||   ||||||||   UGGCCUCCCCUAACCUC C  AUUUUAGGG   GAAUAAGU A UA                 C CG         AAA        U
Stem-loop sequence	ACCGGAGGGGAUUGGAGAGAUUAAAAUCCCCUUAUUUAAAAUUGAAUAAGAAAGGGAUUUUAGCCCCUCCAAUCCCCUCCGGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ066710.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   =|=|||||||||||=|||||| targets:62   GUUUCUCCAAUCCCUUCCGGU   82 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   *||||||||||||=||||||| targets:2086   UUCUCUCCAAUCCUCUCCGGU   2106 Target Full Sequence	1.5	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
BT065189.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   =|=|||||||||||=|||||| targets:935   GUUUCUCCAAUCCCUUCCGGU   955 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965698.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   =|=|||||||||||=|||||| targets:1056   GUUUCUCCAAUCCCUUCCGGU   1076 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   =|=|||||||||||=|||||| targets:1056   GUUUCUCCAAUCCCUUCCGGU   1076 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   =|=|||||||||||=|||||| targets:1263   GUUUCUCCAAUCCCUUCCGGU   1283 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   UAGAGAGGUUAGGGGAGGCCA   1   |*|*||||||||||||||||| targets:1033   ACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget