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BaseInfo

ncRNA ID	osa-miR1873
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:12755913-12756109 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	14 - UCAACAUGGUAUCAGAGCUGGAAG - 37
Stem-loop(if miRNA)	U  AU      C                          C    ---------    GACAUC   A    CUG     GG      -C  UG  --AA  -U       AG  UAUGAA CUCAACAUGGUAUCAGAGCUGGAAGU CUAA         AGUU      AUG UAGC   ACGAU  UGGAGA  CA  AU    GC  GAUACC  ||  |||||| |||||||||||||||||||||||||| ||||         ||||      ||| ||||   |||||  ||||||  ||  ||    ||  |||||A  UC  GUAUUU GAGUUGUACCAUAGUCUCGAUCUUCA GAUU         UCAA      UAC AUCG   UGUUA  ACCUCU  GU  UA    CG  UUAUGU -  CG      U                          A    CAAAAAGAU    --ACAC   -    ---     GA      UU  GU  CAGC  UU
Stem-loop sequence	UAGAUUAUGAACCUCAACAUGGUAUCAGAGCUGGAAGUCCUAAAGUUGACAUCAUGAUAGCCUGACGAUGGUGGAGACCAUGAUAAGCUGAUACCAUGUAUUUUGCCGACAUUGUGUUUCUCCAAGAUUGUGCUACAUCACAAACUUAGAAAAACUUAGAACUUCUAGCUCUGAUACCAUGUUGAGUUUUAUGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164608.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||||=||||||||||||||||||| targets:162   CUUCUAGCUCUGAUACCAUGUUGA   185 Target Full Sequence	0.0	Sequence 2272 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236277.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||||=||||||||||||||||||| targets:162   CUUCUAGCUCUGAUACCAUGUUGA   185 Target Full Sequence	0.0	Sequence 2272 from Patent EP2985353	NA	coding protein	psRNATarget
HI404147.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||||=||||||||||||||||||| targets:162   CUUCUAGCUCUGAUACCAUGUUGA   185 Target Full Sequence	0.0	Sequence 2272 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236685.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||*==|||||||||||||||||*| targets:275   CUGUUAGCUCUGAUACCAUGUUAA   298 Target Full Sequence	1.5	Sequence 2680 from Patent EP2985353	NA	coding protein	psRNATarget
JB165016.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||*==|||||||||||||||||*| targets:275   CUGUUAGCUCUGAUACCAUGUUAA   298 Target Full Sequence	1.5	Sequence 2680 from Patent EP2559767	NA	coding protein	psRNATarget
HI404555.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   ||*==|||||||||||||||||*| targets:275   CUGUUAGCUCUGAUACCAUGUUAA   298 Target Full Sequence	1.5	Sequence 2680 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015759103.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   *****||||||||||||||||||| targets:2546   ACGAGAGCUCUGAUACCAUGUUGA   2569 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g08305 (LOC4348732), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At5g08305(LOC4348732)	coding protein	psRNATarget
XM_015759102.1	ncRNA:24   GAAGGUCGAGACUAUGGUACAACU   1   *****||||||||||||||||||| targets:2886   ACGAGAGCUCUGAUACCAUGUUGA   2909 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g08305 (LOC4348732), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g08305(LOC4348732)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).
2	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).