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BaseInfo

ncRNA ID	novel_zma_miR2499
Species	Zea mays
Class	miRNA
Genome position	Chr1:185049156-185049334 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	156 - GUUUGGUUGGAUGUACAUGGUGGG - 179
Stem-loop(if miRNA)	--        G  U  A  U           -A  A  C   -      UU  AUAGUG    -   GAGAGUCACGUAAAGAUGAGGUAAA   GUUUGGUU GA GU CA GGUGGGAUGGG  GG GG GGC CACUGU  CU      UUUG GAU                         C   |||||||| || || || |||||||||||  || || ||| ||||||  ||      |||| |||                         A   CAAACCAA CU CA GU UCACCCUACCC  CC CC CCG GUGGCA  GG      AAAC CUA                         C CA        A  C  -  U           CG  -  -   U      GG  AACUAA    C   GUGCGGCGGUGGUUUUUGAUGAGGU
Stem-loop sequence	GUUUGGUUGGAUGUACAUGGUGGGAUGGGAGGAGGCGGCCACUGUUUCUAUAGUGUUUGGAUGAGAGUCACGUAAAGAUGAGGUAAACACUGGAGUAGUUUUUGGUGGCGGCGUGAUCCCAAAAAUCAAGGGGACGGUGUGCCCCCCGCCCCAUCCCACUUUGACCUCAAACCAAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548181.1	ncRNA:24   GGGUGGUACAUGUAGGUUGGUUUG   1   |||*||*||||||||||||=|||| targets:2069   CCCUCCUUGUACAUCCAACUAAAC   2092 Target Full Sequence	2.5	PREDICTED: Zea mays proline--tRNA ligase, cytoplasmic-like (LOC103648437), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001151949.1	ncRNA:24   GGGUGGUACAUGUAGGUUGGUUUG   1   =||*||||*||||||||||||||= targets:1856   UCCUCCAUUUACAUCCAACCAAAU   1879 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100278785), mRNA	NA	coding protein	psRNATarget
EU975095.1	ncRNA:24   GGGUGGUACAUGUAGGUUGGUUUG   1   =||*||||*||||||||||||||= targets:1856   UCCUCCAUUUACAUCCAACCAAAU   1879 Target Full Sequence	2.0	Zea mays clone 468769 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061001.1	ncRNA:24   GGGUGGUACAUGUAGGUUGGUUUG   1   =||*||||*||||||||||||||= targets:2042   UCCUCCAUUUACAUCCAACCAAAU   2065 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0083N14 mRNA, complete cds	NA	coding protein	psRNATarget
EZ075878.1	ncRNA:24   GGGUGGUACAUGUAGGUUGGUUUG   1   =*==|==|||=||||||||||||| targets:136   UGUGCUGUGUGCAUCCAACCAAAC   159 Target Full Sequence	3.0	TSA: Zea mays contig11515, mRNA sequence	NA	coding protein	psRNATarget