Search result

BaseInfo

ncRNA ID	novel_zma_miR2493
Species	Zea mays
Class	miRNA
Genome position	Chr10:140834569-140834648 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	57 - GGAUUGGAUGAUAUUGAGUCGGUU - 80
Stem-loop(if miRNA)	--        -  A    -    C    U    UCAUAGUA   GGAUUGGA UG UAUU GAGU GGUU AAAU        A   |||||||| || |||| |||| |||| ||||        G   CCUAACCU AC AUAA CUUA CUAA UUUA        U CA        U  -    U    C    C    CCUAAAAC
Stem-loop sequence	GGAUUGGAUGAUAUUGAGUCGGUUUAAAUUCAUAGUAAGUCAAAAUCCAUUUCAAUCCAUUCUAAUACAUUCCAAUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041309.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   |||||||||||||||||||||||| targets:101   AACCGACUCAAUAUCAUCCAAUCC   124 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   ||*||||||||||||||||||||| targets:6354   AAACGACUCAAUAUCAUCCAAUCC   6377 Target Full Sequence	0.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   ||*||||||||||||||||||||| targets:5939   AAACGACUCAAUAUCAUCCAAUCC   5962 Target Full Sequence	0.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   ||*||||||||||||||||||||| targets:5877   AAACGACUCAAUAUCAUCCAAUCC   5900 Target Full Sequence	0.0	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551219.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   |||||||||||||*|||||||||| targets:285   AACCGACUCAAUACCAUCCAAUCC   308 Target Full Sequence	1.5	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
EU946804.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   ||||||||||||||||*||||||= targets:614   AACCGACUCAAUAUCACCCAAUCU   637 Target Full Sequence	2.5	Zea mays clone 323768 mRNA sequence	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   |||**||||||||||||||||||| targets:138   AACAAACUCAAUAUCAUCCAAUCC   161 Target Full Sequence	0.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   |||**||||||||||||||||||| targets:138   AACAAACUCAAUAUCAUCCAAUCC   161 Target Full Sequence	0.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   |||**||||||||||||||||||| targets:138   AACAAACUCAAUAUCAUCCAAUCC   161 Target Full Sequence	0.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
EZ084135.1	ncRNA:24   UUGGCUGAGUUAUAGUAGGUUAGG   1   ||||*||*||||*||||||||||| targets:25   AACCCACACAAUCUCAUCCAAUCC   48 Target Full Sequence	2.5	TSA: Zea mays contig19779, mRNA sequence	NA	coding protein	psRNATarget